rs243102363 SNP Detail

Summary

• ID
  rs243102363
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:7870385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCATTCT CCAAATGCAT
  CTTGAGAGGT GACTAGAGGA AGCACAGGGG TTTGTTTTGC CTTTTGTTTT TTTGTTTGTT
  TGCCTGTTTG TTTTTAAGGG AAAAAAATAC TCGGAAACAG GAAGACCTGG CTTGGCTTGA
  ATGTGAAGGA GTCACTGAAG TGTAGTGATA TTTGACTTCA GAGGCCCATT TATTTAATAT
  W
  CTATCGAGGA GCCGAAAGAT AAATGTGAGA GTTGTAAAAG TAGAGTAAAG GCTTGAGAGC
  AGTAACTTGA GTTACTCTCA GTAACAATAC TCTTACCATT TTATTTATTT AGTTCAGATT
  ATGCTATTTC AAAGAAAAGG TTTTGTTTTT GCTTCAGTTA ATTTAAACCT TCCTTTACTT
  AGTAATTCAT GCTAGTAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325523064	CHEV_18_7870383	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243102363					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7870385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9688	CpG island 9688	264 bp distal
Gm9993	predicted gene 9993	1272 bp upstream
Rr405554	regulatory region 405554	1117 bp downstream
Rr533616	regulatory region 533616	1309 bp distal
Rr533617	regulatory region 533617	874 bp distal
Rr533618	regulatory region 533618	8 bp distal
Tssr149978	transcription start site region 149978	1891 bp downstream
Tssr149979	transcription start site region 149979	1523 bp downstream
Tssr149980	transcription start site region 149980	1497 bp downstream
Tssr149981	transcription start site region 149981	1233 bp downstream
Tssr149982	transcription start site region 149982	1176 bp downstream
Tssr149983	transcription start site region 149983	1159 bp downstream
Tssr149984	transcription start site region 149984	1056 bp downstream
Tssr149985	transcription start site region 149985	1004 bp downstream
Tssr149986	transcription start site region 149986	658 bp downstream
Tssr149987	transcription start site region 149987	487 bp downstream
Tssr152379	transcription start site region 152379	1261 bp upstream
Wac	WW domain containing adaptor with coiled-coil	Intron