rs243116672 SNP Detail

Summary

• ID
  rs243116672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69002374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG TCTTTCCTGG TGCGGGCGGA
  Y
  CACCTCTCTC CCTCCCTGCT TTTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323727525	CHEV_11_68925050	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243116672					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69002374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	279 bp distal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	548 bp downstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	1010 bp downstream
Per1	period circadian clock 1	1588 bp downstream
Rr402659	regulatory region 402659	675 bp downstream
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	955 bp distal
Rr449877	regulatory region 449877	434 bp proximal