rs243117225 SNP Detail

Summary

• ID
  rs243117225
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119233234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACAGTG GTCTGCTCCG
  GGGAGGGCGG CAGCAGGCTG ACCCCAAGTT ATAGGACCAA CCTCTAGTCG GCTCTTGACT
  TACTGGATTT CTGCACCTGG ACATGTATGT GCCTTGCCTC TTTTAAGTTT AGGTTTGTTG
  AAAGCATTGT CTCAGGACCG TTCGCCTCAG ACTAGAAGTC TGTATGTACA TCACTGCTCC
  W
  GTTTGTTCCA GTTTGACCTC ACCAGTCACT TCCCATTTGG AGGGGCAGAG TGAGAGTGGA
  TCCCTGGTAC CACATTTGCT GCACTGTTTG GGGGAGTGCA TAACGGAACA CAGAGGCACG
  TGTTCTGACT CAACCTGTGG TTCTGCCTTT GGGGATAGAG TCACCTGTGT TGTGGTGGCT
  GCTGCTTTCT CTTTTGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323219428	CHEV_9_119313286	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243117225					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119233234 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	within coordinates
Cpgi22474	CpG island 22474	524 bp distal
Gm47320	predicted gene, 47320	940 bp downstream
Rr688481	regulatory region 688481	1714 bp distal
Rr688483	regulatory region 688483	within coordinates
Rr688484	regulatory region 688484	1627 bp distal
Rr688485	regulatory region 688485	1467 bp distal
Tssr87683	transcription start site region 87683	1943 bp downstream
Tssr87684	transcription start site region 87684	1899 bp downstream
Tssr91983	transcription start site region 91983	682 bp upstream