rs243121228 SNP Detail

Summary

• ID
  rs243121228
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116509784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGGCCCCT CTCCAAGTTT
  TTTTAGTAGT TTGAACTTAA CAGTTCAAGC TGCCCTGTTA TATCTTGCTT GGCTGAGTGA
  AGGCTGCATT TGGGAAATTT CCAATCATAA TCATCGTCAT CCTCAGAATA TATGGTCAAT
  TTGATCTCTG AGTCAAATTG TGTGTGTGTG TGTATGTGTG TGTGTGTGTT TACAATCAAA
  S
  TGCAATATGT TTTGTGTCAA CAATATGGAG TGGCCAACAG AAATGAAACA AAAGAATTAC
  AGCCAAGCTC GAGGTGACTT TAAGCTAGGG AACGGGCTTC AACATGGGGA CCAGCCTTCA
  TCAGTCTCAC TACTCTGACT GTCCTGGAAC TCACTATTGT AGACCAGGTT GGCCTCCAAA
  TCATAGTAAT CTGTCTGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362953552	MGP_WTSI_4_116325192	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243121228					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362953552	MGP_WTSI_4_116325192	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116509784 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	913 bp upstream
Cpgi14637	CpG island 14637	880 bp distal
Tssr38539	transcription start site region 38539	1052 bp downstream
Tssr42909	transcription start site region 42909	1178 bp upstream
Tssr42910	transcription start site region 42910	1161 bp upstream
Tssr42911	transcription start site region 42911	1141 bp upstream
Tssr42912	transcription start site region 42912	1038 bp upstream
Tssr42913	transcription start site region 42913	1016 bp upstream
Tssr42914	transcription start site region 42914	951 bp upstream
Tssr42915	transcription start site region 42915	922 bp upstream
Tssr42916	transcription start site region 42916	905 bp upstream