rs243122603 SNP Detail

Summary

• ID
  rs243122603
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72809641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACAGGAA GTACGGCTCG
  CTCCGCGCCT GGCCGCGCCG CCAACCCGGC CCCGCGCTCT CCTCCTCCTC CTCCTCCGGG
  GTCTGCGGCG CCTCTCCCCG CGCTCGGTGG CCCGCGGCGG ACGGCTGCGC GCCGGGCCTC
  TTCCCTCCGT CCGGATCCCA CCCGGGAGGG CGCGCACACT TGCACACTCA CACACACACA
  M
  ACACACACAC AAAAAGGCGG CGGGCGGGGG CGCGCGGGCG GGGTCGGAGC GTTGGCGCCT
  CGGGCGGGCA GCTCCCGGGG CGGGGGAGGG GCGGGCGAGC GCGCGCGGGA GGGAGGGAGG
  GAAGGAGGGA GGGCGAGGGG AGGAGAAAGC GGCGCGCGGG GAGCCCGGCC GCGCTCAGCC
  GCTCCTCACC TGGGCCGCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354450958	MGP_WTSI_2_72817354	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243122603					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354450958	MGP_WTSI_2_72817354	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72809641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11763	CpG island 11763	within coordinates
D130067C23Rik	RIKEN cDNA D130067C23 gene	632 bp upstream
Rr373352	regulatory region 373352	598 bp upstream
Rr559063	regulatory region 559063	within coordinates
Rr559064	regulatory region 559064	1119 bp proximal
Sp3	trans-acting transcription factor 3	within coordinates
Sp3os	trans-acting transcription factor 3, opposite strand	135 bp upstream
Tssr18359	transcription start site region 18359	163 bp downstream
Tssr18360	transcription start site region 18360	140 bp downstream
Tssr18361	transcription start site region 18361	131 bp upstream
Tssr18362	transcription start site region 18362	206 bp upstream
Tssr18363	transcription start site region 18363	657 bp upstream
Tssr24523	transcription start site region 24523	231 bp upstream
Tssr24524	transcription start site region 24524	within coordinates
Tssr24525	transcription start site region 24525	305 bp downstream
Tssr24526	transcription start site region 24526	1105 bp downstream
Tssr24527	transcription start site region 24527	1598 bp downstream
Tssr24528	transcription start site region 24528	1624 bp downstream