rs243129973 SNP Detail

Summary

• ID
  rs243129973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83142933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAGTGC CTTATCGATG
  TTTTCTCTGC CTCGCTTGGC GAGACCTTGT CAGCTAGGGC GAGGCAGCAG GAATGAGGAG
  ACTGCTCACA GAAATCTAGA GTTTTCTGGG ACCCGAGGGC TTTGGGGATC ACTGCGGGAG
  CGGGCGGCGC GCAGGGCAGT CCGTGGGGCG GGGCGGGGCG GGGCAGCAAG TCCGGAGCGG
  Y
  GGGCGGCGGC GGGGCCGATC GGGGCGCGGA GCCCTGACAG CAGGTACGCG GGCGGCGACC
  CCGCCGACTG TCTGCTGAGC TGCCCCGAAG CTCTCGCGGA GCTGGCGGGG ACTCGGGGTT
  AGGACTTGGT GGGCTCGAAG GGTGGGTGGC ACCCGGGCGG GCGGCCGGGC AGGCCTGGGG
  CCCCGCTGAG CGCTTCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss369025477	MGP_WTSI_6_83115945	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs243129973					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369025477	MGP_WTSI_6_83115945	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83142933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17595	CpG island 17595	within coordinates
Dctn1	dynactin 1	within coordinates
Gm15624	predicted gene 15624	201 bp downstream
Rr399719	regulatory region 399719	121 bp downstream
Rr632791	regulatory region 632791	within coordinates
Rr632792	regulatory region 632792	293 bp distal
Rr632793	regulatory region 632793	11 bp proximal
Tssr57316	transcription start site region 57316	within coordinates