rs243134790 SNP Detail

Summary

• ID
  rs243134790
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8648030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCGGCGGG CCAATGGGGA
  AGGTCGACGG TGGGCGCGCC CCAACCGCCT CCTGCCGGGG AAGCGCCGCT GGCCAAGTGG
  GCGGCGCTTT CCAGTCAGCA TGTGGGCGGG GGAGGGCGGG GCCCGGTCGC CGCAGAGGCG
  TCGACGCCGC CGCCGTAGAC GACGTTCCTC AGTCTTCGAG GTGGGCTCGG CGGCGCAGGC
  S
  GGACAGGGAA CGCCGGTTGG AGAGCGGCGG CGGTCGGACC GAGGCCGCGG GGCCGTGGGT
  GGGCGGTAAA GGGGTGCGGG CGAGGCTAGG GCAGGGTGCG GCACCTCGGA GCGGGGTTGG
  TGGGCAGAGG ACTCGGGCTG TGCGGGGTGG GTGCCGGCTC CGCGGGCTTG CACAGAGGCC
  TGGGCCGGCC GCCGGGCCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395343548	MGP_WTSI_16_8830259	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243134790					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395343548	MGP_WTSI_16_8830259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8648030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7943	CpG island 7943	within coordinates
Hapstr1	HUWE1 associated protein modifying stress responses	within coordinates
Rr325518	regulatory region 325518	within coordinates
Rr370042	regulatory region 370042	127 bp downstream
Tssr137006	transcription start site region 137006	145 bp downstream
Tssr137007	transcription start site region 137007	108 bp downstream
Tssr137008	transcription start site region 137008	62 bp downstream
Tssr137009	transcription start site region 137009	24 bp downstream
Tssr137010	transcription start site region 137010	930 bp upstream