rs243138570 SNP Detail

Summary

• ID
  rs243138570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7352015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTGGCTC TAACTACACA
  TTATTAAAAG TAAAGTGGGA CCTTTAATCT TATTTAGAAT CACAGGTAGA AACATTCACA
  CCAGAATACA TTTCATTTGT CTGCCAATGA AATGTTCCAT AACTGCAGAC AATTTTGGCT
  CCAAAGGGAC TTTTTTTTTT TTTTCAGAAA TAGAATTGGT ACTTCTAAAG AGTGGTGCAA
  Y
  TAAAGATCTC TAAATTCCTA TAACAGAGGA TTGCTCTGAC AAAACTTATC TAGCCTATAA
  TGTCAACAAA ATTGAGCCTG AGAAATGTTC TTTGAAAGAG TAGGGGAATT AAGTAAAGGA
  TTCTCAAATG TTCCCTTTTA ATGTGTTGTC AGACATTGTA TTATCTTCTT CAATGACAAA
  GCAATGGGTT GGAGAGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560299	MGP_WTSI_9_7352015	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243138570					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560299	MGP_WTSI_9_7352015	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7352015 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1528 bp upstream
Tssr83705	transcription start site region 83705	1988 bp downstream
Tssr83706	transcription start site region 83706	1961 bp downstream
Tssr83707	transcription start site region 83707	1939 bp downstream
Tssr83708	transcription start site region 83708	1921 bp downstream
Tssr83709	transcription start site region 83709	1898 bp downstream
Tssr83710	transcription start site region 83710	1381 bp downstream
Tssr83711	transcription start site region 83711	899 bp downstream
Tssr83712	transcription start site region 83712	30 bp downstream
Tssr83713	transcription start site region 83713	360 bp upstream
Tssr83714	transcription start site region 83714	532 bp upstream
Tssr83715	transcription start site region 83715	584 bp upstream
Tssr83716	transcription start site region 83716	855 bp upstream
Tssr83717	transcription start site region 83717	896 bp upstream
Tssr83718	transcription start site region 83718	916 bp upstream
Tssr83719	transcription start site region 83719	942 bp upstream
Tssr83720	transcription start site region 83720	971 bp upstream
Tssr83721	transcription start site region 83721	1223 bp upstream
Tssr83722	transcription start site region 83722	1425 bp upstream
Tssr83723	transcription start site region 83723	1549 bp upstream
Tssr83724	transcription start site region 83724	1870 bp upstream
Tssr83725	transcription start site region 83725	1994 bp upstream
Tssr88066	transcription start site region 88066	1892 bp upstream
Tssr88067	transcription start site region 88067	965 bp downstream
Tssr88068	transcription start site region 88068	1013 bp downstream
Tssr88069	transcription start site region 88069	1460 bp downstream