About   Help   FAQ
rs243150766 SNP Detail
Summary
  • ID
    rs243150766
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44129662 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTTCCTTGC CCTCTCTCTT
TCTCTTCTTT TTCTCCTCCC TGTCCTCTCC CTCTTGCTAT TCTTCCTTTC CTTCCTCTGC
CTCTTCAGTT TCCTCTTTTT ATTCCTTGAC ACCTTGCCAT ATTCTAAAAT CCTCATCCTC
TTTCTTTGTT GTCTTCTTCT TGAGATCTCT TTCACCCTTC CTTCTCCTAC TTCTCTGGTG
Y
CTTACTCCCC CCCCCCCACA CACACACCTT CTCCTTATCT CACCCTCTCC CTGCATCTCC
TCTTTCTCCA ACTTCCTGTC CTGTCTGCCT CTCTTCTTCA TCCTACTCAC CCTCCTCCAC
TTCCAACTGT TTTCTCTTCA GCCCATCTCC TTTCTAGCTC CTTCTCTATT CCTCATCTTC
CTTTCTCTGT ACCCTCTTCC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156132 MGP_WTSI_7_51735608 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243150766 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156132 MGP_WTSI_7_51735608 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129662 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2227 transcription start site region 2227 1218 bp downstream
Tssr2228 transcription start site region 2228 155 bp downstream
Tssr2229 transcription start site region 2229 116 bp upstream
Tssr2230 transcription start site region 2230 295 bp upstream
Tssr2231 transcription start site region 2231 428 bp upstream
Tssr2232 transcription start site region 2232 603 bp upstream
Tssr2233 transcription start site region 2233 636 bp upstream
Tssr2234 transcription start site region 2234 795 bp upstream
Tssr2235 transcription start site region 2235 1429 bp upstream
Tssr66270 transcription start site region 66270 1967 bp downstream
Tssr66271 transcription start site region 66271 1935 bp downstream
Tssr66272 transcription start site region 66272 1883 bp downstream
Tssr66273 transcription start site region 66273 1865 bp downstream
Tssr66274 transcription start site region 66274 1860 bp downstream
Tssr66275 transcription start site region 66275 1840 bp downstream
Tssr66276 transcription start site region 66276 1820 bp downstream
Tssr66277 transcription start site region 66277 1800 bp downstream
Tssr66278 transcription start site region 66278 1756 bp downstream
Tssr66279 transcription start site region 66279 1711 bp downstream
Tssr66280 transcription start site region 66280 1689 bp downstream
Tssr66281 transcription start site region 66281 1649 bp downstream
Tssr66282 transcription start site region 66282 1632 bp downstream
Tssr66283 transcription start site region 66283 1618 bp downstream
Tssr66284 transcription start site region 66284 1606 bp downstream
Tssr66285 transcription start site region 66285 1592 bp downstream
Tssr66286 transcription start site region 66286 1553 bp downstream
Tssr66287 transcription start site region 66287 1517 bp downstream
Tssr66288 transcription start site region 66288 1492 bp downstream
Tssr66289 transcription start site region 66289 1410 bp downstream
Tssr66290 transcription start site region 66290 1372 bp downstream
Tssr66291 transcription start site region 66291 1346 bp downstream
Tssr66292 transcription start site region 66292 1314 bp downstream
Tssr66293 transcription start site region 66293 1292 bp downstream
Tssr66294 transcription start site region 66294 1268 bp downstream
Tssr66295 transcription start site region 66295 1003 bp downstream
Tssr66296 transcription start site region 66296 832 bp downstream
Tssr66297 transcription start site region 66297 808 bp downstream
Tssr66298 transcription start site region 66298 753 bp downstream
Tssr66299 transcription start site region 66299 733 bp downstream
Tssr66300 transcription start site region 66300 710 bp downstream
Tssr66301 transcription start site region 66301 694 bp downstream
Tssr66302 transcription start site region 66302 653 bp downstream
Tssr66303 transcription start site region 66303 644 bp downstream
Tssr66304 transcription start site region 66304 639 bp downstream
Tssr66305 transcription start site region 66305 600 bp downstream
Tssr66306 transcription start site region 66306 546 bp downstream
Tssr66307 transcription start site region 66307 497 bp downstream
Tssr66308 transcription start site region 66308 480 bp downstream
Tssr66309 transcription start site region 66309 430 bp downstream
Tssr66310 transcription start site region 66310 361 bp downstream
Tssr66311 transcription start site region 66311 338 bp downstream
Tssr66312 transcription start site region 66312 319 bp downstream
Tssr66313 transcription start site region 66313 309 bp downstream
Tssr66314 transcription start site region 66314 291 bp downstream
Tssr66315 transcription start site region 66315 284 bp downstream
Tssr66316 transcription start site region 66316 219 bp downstream
Tssr66317 transcription start site region 66317 203 bp downstream
Tssr66318 transcription start site region 66318 162 bp downstream
Tssr66319 transcription start site region 66319 134 bp downstream
Tssr66320 transcription start site region 66320 110 bp downstream
Tssr66321 transcription start site region 66321 86 bp downstream
Tssr66322 transcription start site region 66322 70 bp downstream
Tssr66323 transcription start site region 66323 32 bp downstream
Tssr66324 transcription start site region 66324 within coordinates
Tssr66325 transcription start site region 66325 22 bp upstream
Tssr66326 transcription start site region 66326 63 bp upstream
Tssr66327 transcription start site region 66327 77 bp upstream
Tssr66328 transcription start site region 66328 93 bp upstream
Tssr66329 transcription start site region 66329 132 bp upstream
Tssr66330 transcription start site region 66330 151 bp upstream
Tssr66331 transcription start site region 66331 165 bp upstream
Tssr66332 transcription start site region 66332 186 bp upstream
Tssr66333 transcription start site region 66333 234 bp upstream
Tssr66334 transcription start site region 66334 246 bp upstream
Tssr66335 transcription start site region 66335 255 bp upstream
Tssr66336 transcription start site region 66336 264 bp upstream
Tssr66337 transcription start site region 66337 282 bp upstream
Tssr66338 transcription start site region 66338 338 bp upstream
Tssr66339 transcription start site region 66339 389 bp upstream
Tssr66340 transcription start site region 66340 434 bp upstream
Tssr66341 transcription start site region 66341 479 bp upstream
Tssr66342 transcription start site region 66342 541 bp upstream
Tssr66343 transcription start site region 66343 573 bp upstream
Tssr66344 transcription start site region 66344 718 bp upstream
Tssr66345 transcription start site region 66345 751 bp upstream
Tssr66346 transcription start site region 66346 807 bp upstream
Tssr66347 transcription start site region 66347 845 bp upstream
Tssr66348 transcription start site region 66348 886 bp upstream
Tssr66349 transcription start site region 66349 910 bp upstream
Tssr66350 transcription start site region 66350 938 bp upstream
Tssr66351 transcription start site region 66351 946 bp upstream
Tssr66352 transcription start site region 66352 982 bp upstream
Tssr66353 transcription start site region 66353 1056 bp upstream
Tssr66354 transcription start site region 66354 1070 bp upstream
Tssr66355 transcription start site region 66355 1097 bp upstream
Tssr66356 transcription start site region 66356 1114 bp upstream
Tssr66357 transcription start site region 66357 1128 bp upstream
Tssr66358 transcription start site region 66358 1140 bp upstream
Tssr66359 transcription start site region 66359 1166 bp upstream
Tssr66360 transcription start site region 66360 1178 bp upstream
Tssr66361 transcription start site region 66361 1204 bp upstream
Tssr66362 transcription start site region 66362 1236 bp upstream
Tssr66363 transcription start site region 66363 1253 bp upstream
Tssr66364 transcription start site region 66364 1286 bp upstream
Tssr66365 transcription start site region 66365 1306 bp upstream
Tssr66366 transcription start site region 66366 1326 bp upstream
Tssr66367 transcription start site region 66367 1354 bp upstream
Tssr66368 transcription start site region 66368 1376 bp upstream
Tssr66369 transcription start site region 66369 1410 bp upstream
Tssr66370 transcription start site region 66370 1452 bp upstream
Tssr66371 transcription start site region 66371 1877 bp upstream
Tssr72200 transcription start site region 72200 1797 bp upstream
Tssr72201 transcription start site region 72201 1287 bp upstream
Tssr72202 transcription start site region 72202 430 bp upstream
Tssr72203 transcription start site region 72203 50 bp upstream
Tssr72204 transcription start site region 72204 537 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory