rs243171908 SNP Detail

Summary

• ID
  rs243171908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22715061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTTTGG CTTCCTGTTT
  CCTCTCTGAA AACTTAACCT CTGCCCCATG CGATGGACAA CGATCTCTTG CCAATACTTT
  GAGAAGACTC AGATCTTTCA TCTGCAGCCC ATCGTCAGAA CTCAATCCTT CCAATTGCCC
  AGGGCCACAC GTAGTCCGTG TGGATTTGTG TTCTCTCAAA CTGTGCCAGA CCATAGCTTC
  Y
  CCTCTCCATC CCTCCCACCC TCCCTCTTAC CTTCCTTCCT CCTCTCCTTT GCTCCCTCCC
  TCCCTCTCCC TCCTCCTCTC TGTCACTTCC TCCCTCTATC CCACCTCTCC TTCCCCCCTC
  CCTCCCTCTG TCCCACCTCT TCTTGCCCCT CTTGTTCCAG ACCATCTTTC CCACGTGTTC
  TCATTTTCAT TCTCAGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325113559	CHEV_16_22896384	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243171908					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22715061 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1925 bp upstream
Rr513336	regulatory region 513336	1981 bp distal
Rr513337	regulatory region 513337	1515 bp distal
Tssr4819	transcription start site region 4819	970 bp downstream
Tssr4820	transcription start site region 4820	354 bp downstream
Tssr137565	transcription start site region 137565	1903 bp downstream
Tssr137566	transcription start site region 137566	1894 bp downstream
Tssr137567	transcription start site region 137567	1526 bp downstream
Tssr137568	transcription start site region 137568	1495 bp downstream
Tssr137569	transcription start site region 137569	1474 bp downstream
Tssr137570	transcription start site region 137570	1457 bp downstream
Tssr137571	transcription start site region 137571	1119 bp downstream
Tssr137572	transcription start site region 137572	1020 bp downstream
Tssr137573	transcription start site region 137573	1010 bp downstream
Tssr137574	transcription start site region 137574	991 bp downstream
Tssr137575	transcription start site region 137575	981 bp downstream
Tssr137576	transcription start site region 137576	296 bp downstream
Tssr137577	transcription start site region 137577	111 bp upstream
Tssr137578	transcription start site region 137578	182 bp upstream
Tssr137579	transcription start site region 137579	1804 bp upstream
Tssr137580	transcription start site region 137580	1854 bp upstream
Tssr140504	transcription start site region 140504	1919 bp upstream
Tssr140505	transcription start site region 140505	1870 bp upstream
Tssr140506	transcription start site region 140506	1450 bp upstream
Tssr140507	transcription start site region 140507	1087 bp upstream
Tssr140508	transcription start site region 140508	1045 bp upstream
Tssr140509	transcription start site region 140509	1027 bp upstream
Tssr140510	transcription start site region 140510	979 bp upstream
Tssr140511	transcription start site region 140511	965 bp upstream
Tssr140512	transcription start site region 140512	246 bp downstream
Tssr140513	transcription start site region 140513	257 bp downstream
Tssr140514	transcription start site region 140514	290 bp downstream
Tssr140515	transcription start site region 140515	1865 bp downstream
Tssr140516	transcription start site region 140516	1884 bp downstream