rs243173282 SNP Detail

Summary

• ID
  rs243173282
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127130286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCATCTAC CTCAACAGAG AAGCTGGGCG
  GCGGGGGGGG GGGGTAGGGG GGGCGGCATC CTTTTATTCC CCCACACCAC TCGAAGGCTA
  GTCTCCTCCG CATCTCCAGT GAAGACAGCA TCCGGAGCTC GGGGGCGGAA AAGAGGCGGG
  K
  GGTCGTCGTC GGGGCTAGCC CACCCGGAGG ATAAAGTCTG GGTGGCAGGT TCTCCCAGAG
  CCAGCGGAGG GCCCCTCGCC TCTTCCATCC CCCACTCTTG GCTTTGCAGT GAAATTCCAG
  CGGGGAGGGG ATCTTGGGGG TGGGAGAGGT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321941146	CHEV_6_127103341	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243173282					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127130286 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	1130 bp upstream
Cpgi18035	CpG island 18035	854 bp distal
Cpgi18036	CpG island 18036	358 bp distal
Cpgi18037	CpG island 18037	within coordinates
Cpgi18038	CpG island 18038	735 bp proximal
Gm56941	predicted gene, 56941	within coordinates
Rr145781	regulatory region 145781	within coordinates
Rr399942	regulatory region 399942	586 bp downstream
Tssr59022	transcription start site region 59022	749 bp downstream
Tssr59023	transcription start site region 59023	60 bp downstream
Tssr59024	transcription start site region 59024	319 bp upstream
Tssr63378	transcription start site region 63378	849 bp upstream
Tssr63379	transcription start site region 63379	1404 bp downstream