rs243177556 SNP Detail

Summary

• ID
  rs243177556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32522768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGGCTGGC GCCGCGTCAC TCGCCCAAGC AGCGACGCGT
  CAGCAGCGCC CCCGACAGCT CCGCCCCTGC CGGGGTCTCC GCGCTGAGCC ACGCCTCTCT
  R
  GGGGCGGGGC CTGAGGGCGC CGGGCCCCTG GAAGAGGAAG GATGTAAGTC TGCGGTCAGA
  GTAGAGGATA TGGCCTGCAT GGGCCTCGGT CTCCGGGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324311980	CHEV_13_32430654	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243177556					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32522768 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	34 bp upstream
Cpgi5422	CpG island 5422	within coordinates
Gmds	GDP-mannose 4, 6-dehydratase	45 bp upstream
Rr369665	regulatory region 369665	26 bp upstream
Rr476844	regulatory region 476844	37 bp distal
Rr476845	regulatory region 476845	within coordinates
Tssr121995	transcription start site region 121995	243 bp upstream
Tssr121996	transcription start site region 121996	221 bp upstream
Tssr121997	transcription start site region 121997	125 bp upstream