rs243180612 SNP Detail

Summary

• ID
  rs243180612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23492414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACTCGC TTGCCCGTTT
  CTCATACCCA CCTCATGTAC TCCTAAGTCT GTGCATTTGA TAAAAGTTTG TCTCAATTTG
  TTCTTTCACT CTCCAGACAC TGGGTCAGGA CCTCTTCTGT GCCACCACAC ATATGCATAG
  CTTCTTTTTA TTTTTATAAA ACACAACAAA GGGCAGTTTT AAGTGAACCT GCTCACTCGG
  Y
  CCACAGGGGC GTGTTTAGAT GAATCCCAGA CTTTATATAA GAGCTGGAAT GTAGTAGGTT
  AGTGGCATGG TTCTTGCTTA GCATATAAAG CCCCAATTCA ATCCACAGCA CTTTAACTAA
  ACTTCGGAGA AATGTCTGAA ACATCTGACT TAACATTACA TCGCCTTGAT ATTTGCCTTC
  TATAATGTAA CGGAGAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324288354	CHEV_13_23400113	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243180612					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23492414 () rs orientation: forward

Symbol	Name	Function Class
4930557F10Rik	RIKEN cDNA 4930557F10 gene	within coordinates
4930597G05Rik	RIKEN cDNA 4930597G05 gene	1187 bp downstream
Cpgi5346	CpG island 5346	1245 bp proximal
n-TIaat9	nuclear encoded tRNA isoleucine 9 (anticodon AAT)	808 bp downstream
n-TVcac11	nuclear encoded tRNA valine 11 (anticodon CAC)	543 bp downstream
Rr475820	regulatory region 475820	319 bp distal
Rr475821	regulatory region 475821	309 bp proximal
Tssr121691	transcription start site region 121691	1909 bp downstream