rs243182971 SNP Detail

Summary

• ID
  rs243182971
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87321311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAATTTTT ACATCATCAC AAGCACACAA
  ATGCGTAACT ACCTCTTTTC CTCCTCCCTT TCTTCCACCC CCtctctttt tgagattggt
  attattacag tccaagctgg tctcaaactc ggcttttata accagatgtc tttgaactga
  K
  gttgctactt gttatctccc aagtcctagg gttatgggtt tgtgcTGTAT ACTTAACTAG
  GAGTGCATGT GGAAGGTATT TATCTAGACT TAGATTTTTC TGTGATTTTC ATGAACTAGT
  CATAGCAGGA AGTAGAATAG ACAACTGGAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319829363	CHEV_1_89290164	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243182971					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87321311 () rs orientation: forward

Symbol	Name	Function Class
Gigyf2	GRB10 interacting GYF protein 2	within coordinates
Kcnj13	potassium inwardly-rectifying channel, subfamily J, member 13	within coordinates
Rr414787	regulatory region 414787	1022 bp proximal
Rr414788	regulatory region 414788	1130 bp proximal
Tssr12853	transcription start site region 12853	1132 bp downstream