rs243186557 SNP Detail

Summary

• ID
  rs243186557
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139336423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGGATG TGAAATTATC
  CCCCAATCCC AGCGCTCCTA CAGCAGGATA GGAGGTGAGA GAGCAGCGGG AATCCCAGAA
  GCCCTCACAC CAGCTCGTAG GCAGCTACAA GCAAAGGATC CCATTGCAAA GAAGGTTCAA
  GGTGAGAACT GATACCAGAC GTCATCCTCT GACCTCTACA CACGGGCTGT GGTATGTGTG
  W
  GTTTGTACTC ACACACATGA ACCTGCACAT ATGGGGACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACAGACCT TTTCAACTGT TCATGGTGCA TACTAGTAAT
  CTAAGCCCTA GGGAAGGAGA GGCTGGAGGA GCAGGAGTTC AAAGCCAGCA TGAGCTACAC
  AAGACCCTGT ATCAAGACCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704281	CHEV_5_139826622	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243186557					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139336423 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	1949 bp upstream
Rr623253	regulatory region 623253	542 bp distal
Rr623254	regulatory region 623254	486 bp proximal
Rr623255	regulatory region 623255	740 bp proximal
Rr623256	regulatory region 623256	1459 bp proximal
Tssr49499	transcription start site region 49499	1939 bp upstream