rs243194278 SNP Detail

Summary

• ID
  rs243194278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119229769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTCTGCA AAAAGAGCAA
  GTGCTTTTTA CCGCTGAGCC ATCCAACCCC AGAGTCCCAT CTTTTAAAAA GTCACCTCAG
  TTACCATTTA GAAAGGGTGC TAGTACCATA GAGATGGCTC ACAAGTACTG GGACCTGATG
  CCAATCCTTA GGATTTGAGT TTGATTCCCA GCTCCTACAG AGTGGAAAGA CAGAACCAAC
  Y
  GCAAGTTGTC ATCCAACCTC AATGTGTTCA TGCTCTCTCT CTTCTGTCTC TGTCTGTCTG
  CTTCTCTCCT TAACACACAC ACACACACAC ACACACACAC ACACACACAC ATGCATGCAC
  ACATACACAT ACAAACACAC ATATAAATAA GTAAAATATA ATAAAAATCT TAAAAGAAAT
  AGAAGATACA CTTAGCAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323219417	CHEV_9_119309821	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243194278					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119229769 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	1415 bp upstream
Cpgi22474	CpG island 22474	899 bp proximal
Gm53515	predicted gene, 53515	within coordinates
Gm69683	predicted gene, 69683	within coordinates
Rr688480	regulatory region 688480	514 bp proximal
Rr688481	regulatory region 688481	755 bp proximal
Rr688482	regulatory region 688482	1260 bp proximal
Rr688483	regulatory region 688483	1752 bp proximal
Rr688484	regulatory region 688484	1817 bp proximal
Rr688485	regulatory region 688485	1977 bp proximal
Tssr87682	transcription start site region 87682	1378 bp upstream
Tssr87683	transcription start site region 87683	1453 bp upstream
Tssr87684	transcription start site region 87684	1523 bp upstream