rs243197183 SNP Detail

Summary

• ID
  rs243197183
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48716079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTATCCCG GGCTCTGGAC
  TGCCAGGATA TTCACAGCTC TCCCTCCAGC TGACCTATTT AGCTCACACT GGAACTTTGG
  GACCTCAAGA TCCCATCACT CACCCAGTTA ACTAATATAA GGCAGTTTTC AGTGATCTTC
  CATGTGGAGA CAGGAACTAA GTTGATAGAT AGGAAATAAA CATAGCTAAC ACCATCAATC
  M
  CCTGGGATGC CCAACAGCAC TCACAGGTAG CTGTCACTTT TGAGTCATTT GTCTTTTAAA
  TGACAATACC ATATAACCTT CTTACACTCT TTCTTTTTTT TTTTTTAATG AAAATAAGCT
  TTATTACATC AAGTAATAAA TACAAAGATG CAACAGTTTC AGTCGCTTTC TTCCAGATGT
  TGTGATGGGC TCACAGTAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664660	CHEV_11_48638754	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243197183					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48716079 () rs orientation: forward

Symbol	Name	Function Class
Cdk2ap1rt	cyclin dependent kinase 2 associated protein 1 retrotransposed	94 bp downstream
Cpgi2781	CpG island 2781	513 bp distal
Cpgi2782	CpG island 2782	803 bp proximal
Gm74096	predicted gene, 74096	within coordinates
n-TGacc1	nuclear encoded tRNA glycine 1 (anticodon ACC)	1451 bp downstream
Rr446122	regulatory region 446122	376 bp distal
Rr446123	regulatory region 446123	403 bp proximal
Rr446124	regulatory region 446124	1393 bp proximal
Trim7	tripartite motif-containing 7	886 bp upstream
Tssr107641	transcription start site region 107641	1049 bp downstream
Tssr107642	transcription start site region 107642	1472 bp downstream