rs243204444 SNP Detail

Summary

• ID
  rs243204444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22713869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGGAAT CAGAATAGTT
  TTGAACTCAA ATAGGTCTCA CTTCCTCTGT GAGGATTCTG GGTCCTGGGG ATTCTAATGC
  CATCTTTTAA AGAAGCCCGT TCTTGTGGGC GAACATTGTC CCCGTGGCTG TGACTTGGTG
  ACCTTCATAC AGCTGCTTGA AGGCTTAGAG AAGAAGTCAT GCTACATTGG AGCACTAGGA
  R
  CCCTTTCTAA ATAAGCAAGC TGTTGTGAGT ACACTGGAGA GCTGCAGTTG AGACCCTGCT
  ATCTTCCCGC CCAGACTCTG CAGAGGACGT TCGTAAGTTG TGCCCACGGT GCCCACTCCT
  GACTCCGTTC AACGATACCA ACGTGGTCCA CACCGTCAAC ACTGCCCTGG CTGCCTTCAA
  CACACAGAAT AATGGAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628362	MGP_WTSI_16_22895192	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243204444					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628362	MGP_WTSI_16_22895192	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22713869 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	733 bp upstream
Rr513336	regulatory region 513336	789 bp distal
Rr513337	regulatory region 513337	323 bp distal
Tssr4819	transcription start site region 4819	212 bp upstream
Tssr4820	transcription start site region 4820	828 bp upstream
Tssr137562	transcription start site region 137562	1948 bp downstream
Tssr137563	transcription start site region 137563	878 bp downstream
Tssr137564	transcription start site region 137564	848 bp downstream
Tssr137565	transcription start site region 137565	711 bp downstream
Tssr137566	transcription start site region 137566	702 bp downstream
Tssr137567	transcription start site region 137567	334 bp downstream
Tssr137568	transcription start site region 137568	303 bp downstream
Tssr137569	transcription start site region 137569	282 bp downstream
Tssr137570	transcription start site region 137570	265 bp downstream
Tssr137571	transcription start site region 137571	57 bp upstream
Tssr137572	transcription start site region 137572	80 bp upstream
Tssr137573	transcription start site region 137573	174 bp upstream
Tssr137574	transcription start site region 137574	195 bp upstream
Tssr137575	transcription start site region 137575	201 bp upstream
Tssr137576	transcription start site region 137576	881 bp upstream
Tssr137577	transcription start site region 137577	1303 bp upstream
Tssr137578	transcription start site region 137578	1374 bp upstream
Tssr140504	transcription start site region 140504	727 bp upstream
Tssr140505	transcription start site region 140505	678 bp upstream
Tssr140506	transcription start site region 140506	258 bp upstream
Tssr140507	transcription start site region 140507	94 bp downstream
Tssr140508	transcription start site region 140508	138 bp downstream
Tssr140509	transcription start site region 140509	157 bp downstream
Tssr140510	transcription start site region 140510	172 bp downstream
Tssr140511	transcription start site region 140511	215 bp downstream
Tssr140512	transcription start site region 140512	1438 bp downstream
Tssr140513	transcription start site region 140513	1449 bp downstream
Tssr140514	transcription start site region 140514	1482 bp downstream