rs243213819 SNP Detail

Summary

• ID
  rs243213819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48715564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACGCAGTC GTCGTGACGT
  CTGATCCCCC ATCTAGACGC CTCGACAGGG GATCGCCTCA GTTGTGTGGA CCTCACAGCG
  AAACCTGCTC CCACAATGTC TTCACACACC AAACTCGTGC GCTAGGCAAT TTGTCTCCCG
  GCAGTACTGT CACACTTGAA AGTCACACAA AACATCCACT GAAGTAATCA GCGGCGTCCT
  Y
  CTTAAAGATC CACACGTCCG AAGTTCAGGC ACAGCATGGT CCAAATCAGC CTAGTAGTGG
  CAAAACTACT CGGGCCACCT GCATTAGCAC ACTTTCTTCC AAACTACACC TACAAAGTGC
  TCATTGCTCA GTCACTGCTC TGTCCCAGAA ACTACACATC ACTAAGTCCA GGATCCAGAA
  TAGGCTTAAA AACCCAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664657	CHEV_11_48638239	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243213819					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48715564 () rs orientation: forward

Symbol	Name	Function Class
Cdk2ap1rt	cyclin dependent kinase 2 associated protein 1 retrotransposed	609 bp downstream
Cpgi2781	CpG island 2781	within coordinates
Cpgi2782	CpG island 2782	1318 bp proximal
Gm74096	predicted gene, 74096	within coordinates
n-TGacc1	nuclear encoded tRNA glycine 1 (anticodon ACC)	936 bp downstream
Rr446122	regulatory region 446122	within coordinates
Rr446123	regulatory region 446123	918 bp proximal
Rr446124	regulatory region 446124	1908 bp proximal
Trim7	tripartite motif-containing 7	1401 bp upstream
Tssr107641	transcription start site region 107641	1564 bp downstream
Tssr107642	transcription start site region 107642	1987 bp downstream