rs243216910 SNP Detail

Summary

• ID
  rs243216910
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:4735381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCTTACA AATGAACTAT
  CAAACCTTAT CACACTTCTC TCTGGGTTCT GCTTCCCTTA TTTCTTTACA TATTATTCTA
  CTCTAAGGCT TTGCTGAAGT TGTCTGTAGA GTTCACATCT TCCATAGCTC TTCCCTTCTA
  TGACAGCCTT CAAAACCTTT TTCTTTTCCC TTTTTAAAAA ATCAAAAAAA ATTTAGCATC
  R
  TGTCTGTGTG AATGTGTGTC TCTGTGTGTG TGTGTGTGTC TGTGTGAGTG TGTGTATGTG
  TCTGTGTGTG TGTGTGAGTC TCTGTGTGTG TGTCACTGTG TGTGTGTCTG TGTGAGTGTG
  TGTGTCTCCG TGTGTGTGTG TGTGTGTGTG TCTGTGTGAG TGTGTGTGTA TGTGTCTGTG
  TGTGTGTCTG TGTGTCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321727753	CHEV_6_4685381	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243216910					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4735381 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr378854	regulatory region 378854			within coordinates
Rr626051	regulatory region 626051			1779 bp distal
Sgce	sarcoglycan, epsilon			Intron
				Noncoding-Transcript-Variant
Tssr59723	transcription start site region 59723			1040 bp downstream