rs243220925 SNP Detail

Summary

• ID
  rs243220925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88187087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCTTCAT GAAAAACAAT
  CTGTCAAGGA TCAGAATTGC TGCCTGCAAC TTGGCGGGTG AGACACGTGT CCAGGTTCAG
  GGGGGATCTT GAAGCCACAT AGTTAATCCT GGGTTTGGAT GGGGGAGTCA AAGCAGCTGA
  GGTGGGAGGA GGGCGAGCCC TAGTCTAGCT TGCAACACTA GGTCTGCCAG TCCTGTTTCA
  Y
  GCTCCCCTGA TCTTGCACAC TGCCAACTTC AGCCAGATAA GACACTTGAC TGATGTCTTC
  ACAGGTCAAT GTGTGCCTGC CTCTCTTTCT GGGAGGCAGC CAGCCCTGTG GGCCTGGCGA
  CCCCTCACTG GAGTTAAGGC ATGACTGTAC ATCTATCATT TCAGGAATTA TTATGAAGCA
  GCTGTCTGCC CATTATCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	DBA/1J	LP/J	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss350399137	MGP_WTSI_1_90155940	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	DBA/1J	LP/J	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs243220925					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399137	MGP_WTSI_1_90155940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88187087 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	87 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	240 bp downstream
Tssr7959	transcription start site region 7959	220 bp downstream
Tssr7960	transcription start site region 7960	197 bp downstream
Tssr7961	transcription start site region 7961	168 bp downstream
Tssr7962	transcription start site region 7962	8 bp downstream
Tssr7963	transcription start site region 7963	11 bp upstream
Tssr7964	transcription start site region 7964	26 bp upstream
Tssr7965	transcription start site region 7965	62 bp upstream