rs243221147 SNP Detail

Summary

• ID
  rs243221147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:61677069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTAGGAGT GTAAGTAGAT CAGAACTCCC
  AGATCCATAA TTTAGGACCA AACCATCCCC AGCAACTCAA ACTCAGTTTA AGTTGACATA
  GGAGCAACTC TGGTAGGAAA TGGAGGATAC CCCGGGGGAT CTTATGGATG CACTAAATTG
  Y
  CATAAAAACT GTCAGGAGCC ACTAGAGATT TAGATAGGAG GACCTGTGTT CTTTGCACCA
  TAACCAGCTG TGTCACCTGC TCAGTTTCTG AACACCAGTC TGTTTTGATT TTGAATCTTT
  CAGTGCTGAA AATCGATGAC TGGAGGGAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319741947	CHEV_1_61684484	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243221147					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:61677069 () rs orientation: forward

Symbol	Name	Function Class
Cpgi308	CpG island 308	695 bp proximal
Pard3b	par-3 family cell polarity regulator beta	914 bp upstream
Rr29520	regulatory region 29520	331 bp proximal
Tssr95	transcription start site region 95	1002 bp upstream
Tssr6971	transcription start site region 6971	909 bp upstream
Tssr6972	transcription start site region 6972	959 bp upstream
Tssr6973	transcription start site region 6973	1032 bp upstream
Tssr6974	transcription start site region 6974	1083 bp upstream