rs243231836 SNP Detail

Summary

• ID
  rs243231836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108139415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAGGCC CAGAGCTCCC
  ACCTGTCCAG CTGGAAGACT CCCAGGCTCT ATTTTAAACC ATGTACATGT GGTTCCGGGT
  GTACAAGCCT TTATGTCCCC CAGCTAATTC CTGCTGGCCC TGAAGGCCAC GCACGGCTCA
  GGAAGGCTCT CTTCAGGCTA CCATGCAAGC AAGCATATTC TCGTCATGGG TTCTGATTCT
  Y
  ATTCACTGAA CCCAAAATCA GTTAAGGACA AAGCAAGATG TATTACATGG GCCCCCAAGT
  CCTACCCAGA AGTCCCCAGG GAGTAAAGTC AAACATTTAC TAAATGAATG CATCTTGTCA
  AATCAGGTTT TTTAGAATGA TGAGGACTTG TCCGGTGACA ATTTCAACAG AGGTACATAT
  CAACAATGCT TGCACATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378863583	MGP_WTSI_9_108164547	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243231836					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378863583	MGP_WTSI_9_108164547	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108139415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22331	CpG island 22331	921 bp proximal
Dag1	dystroglycan 1	within coordinates
Gm69433	predicted gene, 69433	1832 bp upstream
Rr401678	regulatory region 401678	1693 bp upstream
Rr686759	regulatory region 686759	467 bp proximal
Rr686760	regulatory region 686760	1059 bp proximal
Rr686761	regulatory region 686761	1510 bp proximal
Rr686762	regulatory region 686762	1843 bp proximal
Tssr87070	transcription start site region 87070	1852 bp upstream
Tssr91511	transcription start site region 91511	1490 bp downstream
Tssr91512	transcription start site region 91512	1671 bp downstream