rs243251795 SNP Detail

Summary

• ID
  rs243251795
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40549284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGAGCA ACTGGCTCAG
  TCAGTTGGGA AAGCGGGAGA CAAGGCAGGG GGCGGCTCTA GGCCTCCTGC TCCCTCTCAG
  TGGAAGCTGC TCTCAGCTTC GGAAAATTCC AGAGGGAGGG ATGCTCTGCA AGGGGTTTGC
  ATCTGATAAT GAAGATGTGA GGTCTAGTGG CCTCTGGCCG CTGATGCTGT TCTGGGGGGG
  K
  GGGGGGGATA GAAGGGCAGG TGGAAGGAAC ATAGAGGTGA TGTGGCTTTA AGTACCAACC
  GAGAGTGAGC TGCAGAGACA GAGAGAGGGT GGGGTGAGCA CCCCAGTGGA GGAAGAGGAG
  GAGATAAAAG TGTGGGCTTC ATGCTGCACA ACAGTCCGAG ACACAGAAAT GAAAGGAGAG
  CTCTGTTAGC ACGGTTGTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	CAST/EiJ	CE/J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380127292	MGP_WTSI_10_40393094	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	G	T	T	G	T	T	G	G	G	T	T	T	T	T	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	CAST/EiJ	CE/J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243251795					SNP	G	G	T	G	T	T	G	T	T	G	G	G	T	T	T	T	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380127292	MGP_WTSI_10_40393094	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40549284 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Rr430241	regulatory region 430241	837 bp proximal
Tssr93028	transcription start site region 93028	178 bp downstream