rs243253539 SNP Detail

Summary

• ID
  rs243253539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90944888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTGCACGG GGAGACAGGT AGGGTCCAGC
  ATCACCGATC CAGTGACTGT AGCTGCATTT ACATTTATGA ACCTTGCATA TTCCTAGCCA
  AGGTCAACTG GCCCAGCAGC CATGTTTCAG AGgtgtgtgt gtgtgtgtgt gtgtgtgtgc
  R
  tgtgcatgtg catgtgtatg CACACATGCG TGTTTGTGGA TGCTTCTCTA CCTGTACAGG
  TCTCTAAGTC TGTCTGTATT GTGAATGAAC AGGCATCATT TCAAAGTGCG TGAGAGTCTG
  TGTGTGCATC AGTATtgtgt aggagtgtga                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391689	CHEV_2_90954700	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243253539					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90944888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	499 bp proximal
Rr373534	regulatory region 373534	876 bp downstream
Rr560649	regulatory region 560649	1655 bp distal
Rr560650	regulatory region 560650	372 bp distal
Rr560651	regulatory region 560651	646 bp proximal
Rr560652	regulatory region 560652	709 bp proximal
Spi1	Spi-1 proto-oncogene	Intron
Tssr18850	transcription start site region 18850	1265 bp downstream
Tssr18851	transcription start site region 18851	260 bp downstream
Tssr18852	transcription start site region 18852	200 bp downstream
Tssr18853	transcription start site region 18853	617 bp upstream
Tssr18854	transcription start site region 18854	652 bp upstream
Tssr18855	transcription start site region 18855	817 bp upstream
Tssr18856	transcription start site region 18856	864 bp upstream
Tssr18857	transcription start site region 18857	979 bp upstream
Tssr18858	transcription start site region 18858	1043 bp upstream
Tssr18859	transcription start site region 18859	1150 bp upstream
Tssr25158	transcription start site region 25158	1202 bp downstream