rs243259852 SNP Detail

Summary

• ID
  rs243259852
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49429284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAATAGAT ATAAAATTTG
  CTAGCTATTT GTAATTGTGG ATAATTTTCG CTAGCGTTTC CCTCTCTTTC CCTCCCCTCT
  TTCTGCGCCC CATTTCAAAT TTGGGGGGTG AGAACATCAG AATAACTCCC TATTATTTTG
  AGTATTGCAT GTTTCTGGTA GATTTTAGTA CCACACATAG GCCCTGTTTT TTCTCCTTCC
  W
  TTTTTTTTTT TATATCAAGA CTGAGAGATC ATTTAGCTAA GAGCTCATCA AAATGAATGC
  TGGCATGGGT AGAGTATTTT ACCTTAAAGA GGAGGGGAAA GATACTCGTG ACCTATGTGT
  CTCCACCTCC CTCTCCTCTC TGGCTACGGC CTCTGCTTAC AACGTGGCGC GCTTTGAGCC
  AGTGAGGATT TGTGATCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385922524	MGP_WTSI_12_50483488	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243259852					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385922524	MGP_WTSI_12_50483488	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49429284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	460 bp proximal
Foxg1	forkhead box G1	382 bp upstream
Gm34304	predicted gene, 34304	673 bp upstream
Gm56518	predicted gene, 56518	1162 bp downstream
Rr465759	regulatory region 465759	within coordinates
Rr465760	regulatory region 465760	517 bp proximal
Rr465761	regulatory region 465761	1253 bp proximal
Tssr3838	transcription start site region 3838	1831 bp upstream
Tssr113389	transcription start site region 113389	506 bp downstream
Tssr113390	transcription start site region 113390	423 bp downstream
Tssr113391	transcription start site region 113391	151 bp upstream
Tssr113392	transcription start site region 113392	175 bp upstream
Tssr113393	transcription start site region 113393	290 bp upstream
Tssr113394	transcription start site region 113394	584 bp upstream
Tssr113395	transcription start site region 113395	1416 bp upstream
Tssr113396	transcription start site region 113396	1624 bp upstream
Tssr113397	transcription start site region 113397	1757 bp upstream
Tssr113398	transcription start site region 113398	1786 bp upstream
Tssr113399	transcription start site region 113399	1855 bp upstream
Tssr113400	transcription start site region 113400	1865 bp upstream
Tssr116231	transcription start site region 116231	671 bp upstream