rs243267915 SNP Detail

Summary

• ID
  rs243267915
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156665219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAATAGT TATTCAAGAC
  TTACTCTTTT GCTCTTTTGG AACCTATTTT TATAGTAGAA AAGGCTGGGC CAGAGGACAT
  GATGATTCAT CTTCAGTTCA CAGTCAATGG GGAGTCAACG ATCCTTTGGG TTTTCTTTTT
  TTCTTTTAAT TCAGGGTTGT GTTTGTTTTT AAATGATACC AATCAACTAA CAACAACAAC
  M
  ACAACAACCA CCACCTTATT TTGACAATTG ACACTGAATT GACTAGTTTT AACTCATCTT
  GACACAAGCT AGAGGAGGAA GCCTCAACTG AAAATGCCTC CATGAGATCC AGCTGAGGGC
  AAGCCTGGAG GAAATTTTCT TAGTGATTGA TGTGAAAGGG CCCAGTCACC CCTGAGCTGG
  TGGTCCTATG GCTGGGTGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352046939	MGP_WTSI_1_158767780	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	C	A	C	C	A	A	C	A	A	A	A	C	C	A	C	C	C	C	A	A	A	A	C	A	A	C	A	C	C	A	A	C	C	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243267915					SNP	A	A	A	C	C	A	C	C	A	A	C	A	A	A	A	C	C	A	C	C	C	C	A	A	A	A	C	A	A	C	A	C	C	A	A	C	C	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352046939	MGP_WTSI_1_158767780	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156665219 () rs orientation: forward

Symbol	Name	Function Class
Angptl1	angiopoietin-like 1	1276 bp upstream
Gm28693	predicted gene 28693	1710 bp upstream
Gm68672	predicted gene, 68672	within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr421263	regulatory region 421263	546 bp proximal
Rr421264	regulatory region 421264	1304 bp proximal
Tssr9579	transcription start site region 9579	1254 bp upstream
Tssr9580	transcription start site region 9580	1266 bp upstream