rs243274813 SNP Detail

Summary

• ID
  rs243274813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139337212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAGCTAC CGTGCAGACA
  CCACAGCACA CCATCTGCCT TGACTTCCTC CTTTCCAATA CAAGCAAACG GAGCCACACC
  AATCCTCCCC TGGGATTGTG ACATCAGAGT CCTGTTGGTC CCTCTGCCTC TGATTTCCAT
  AGCCCTCGCT CCTGGCCAAG TCTGGCACAT AGCAACTGCT CAATAAGGAT TTCTTGCAGC
  R
  ATTATGTAGA TTTTCCTGTC TGGGTAGGGG CCCTAGCTTG GATATTCTGT AAGTGGCCTT
  GGTGGCAGTT GGTTGAAACA TGACCCAGAC ATCCACAGTA GCGACAGGGA GCTGTCGCAG
  CCCAGGCTCA CGCTGTTGCA GGGAAGAGAG GTGCTAGGGT GAATGCAGTC TAGGCTGGGC
  TTCTCTCCAC AGACAAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704292	CHEV_5_139827411	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243274813					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139337212 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	1160 bp upstream
Rr623253	regulatory region 623253	1331 bp distal
Rr623254	regulatory region 623254	50 bp distal
Rr623255	regulatory region 623255	within coordinates
Rr623256	regulatory region 623256	670 bp proximal
Tssr49499	transcription start site region 49499	1150 bp upstream