rs243275590 SNP Detail

Summary

• ID
  rs243275590
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54968096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCATCTC TTTGCCAATG
  TTCACAAATA TTTACTGTTC ATGTGCTTGT CTGGAAAGCA TCTTAAACTT AATTTAGTAC
  AAAGTTAGTT TATAATTTTT ACCGCCAAAC CTGATTCTCC TCTGTGAACA TTATCACCAT
  CACCTACTTG GTTGTTCAAA AACTGTGTCA TATTTGATAT ACCTTCCCTA CACACACAGA
  S
  ACAGACACAC AATCATCAAG CCTTATGATG TTATCTTCTG AGTATTACTC TACCTTCCCT
  GTCACCACCC TATTAGATCA TGGTGGCATT ATCTCTGACA TGAATGTGGC AAGATCGTAA
  CTGGGCTTCC AATAACTTGC CCTATTTGCA GAGTAACCAG AATGAGCTTT CAAATACATA
  AATCTCATCG TCTGCTTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368374979	MGP_WTSI_6_54941105	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243275590					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368374979	MGP_WTSI_6_54941105	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54968096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	1328 bp proximal
Ggct	gamma-glutamyl cyclotransferase	within coordinates
Rr366742	regulatory region 366742	1971 bp upstream
Rr630884	regulatory region 630884	1525 bp proximal
Rr630885	regulatory region 630885	1676 bp proximal
Rr630886	regulatory region 630886	1829 bp proximal
Tssr61105	transcription start site region 61105	1747 bp downstream
Tssr61106	transcription start site region 61106	1771 bp downstream
Tssr61107	transcription start site region 61107	1799 bp downstream
Tssr61108	transcription start site region 61108	1814 bp downstream
Tssr61109	transcription start site region 61109	1835 bp downstream