rs243286314 SNP Detail

Summary

• ID
  rs243286314
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:143653036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG GGTGACGTGG GGTTGACGCT
  S
  GGCGGCGGGT TTTGCTGAGG TCTGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320010608	CHEV_1_145624428	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243286314					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143653036 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi837	CpG island 837			within coordinates
Gm25663	predicted gene, 25663			1630 bp upstream
Gm29170	predicted gene 29170			344 bp upstream
Ro60	Ro60, Y RNA binding protein			242 bp upstream
Rr396352	regulatory region 396352			within coordinates
Rr396353	regulatory region 396353			769 bp upstream
Rr419943	regulatory region 419943			241 bp distal
Rr419944	regulatory region 419944			within coordinates
Rr419945	regulatory region 419945			133 bp distal
Rr419946	regulatory region 419946			355 bp proximal
Tssr9196	transcription start site region 9196			within coordinates
Tssr9197	transcription start site region 9197			34 bp upstream
Tssr14094	transcription start site region 14094			259 bp upstream
Uchl5	ubiquitin carboxyl-terminal esterase L5			mRNA-UTR
				Noncoding-Transcript-Variant