rs243287945 SNP Detail

Summary

• ID
  rs243287945
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84587511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTGACT TTGGGCGGGG
  AAGTCGCTCC AGTGTGTCTG ACTTTGAGGC ACCGGGAGGC CGGCCAAGTG TTGTGTGATG
  GCCTGAGACT AGTTCATGTT TTTACTGAGC CCTGTGTGTT TGCGTGCCTG TGTATGTGTG
  TATGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGAGAG
  A
  GAGACTTGTT ACTCTTGCCA GCCCCCGTCA CTGCCTCAAG TCACTTTATA CTCCCAGTCT
  GTTGGAAAAC CCATCCACCA CCCCTGCTCA CCCGGACTGA TTGGGACCCC CAGTTGGCAC
  TGCCCAGATG CATACTCAAC CACCTGGAGG ATGGATGGGG TCACCATGTG CCCTCCTGCC
  CACCCCACCC TTGGTGCCCA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	LP/J	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss394790107	MGP_WTSI_15_84533740	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	LP/J	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs243287945					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394790107	MGP_WTSI_15_84533740	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84587511 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304870	regulatory region 304870	911 bp distal
Rr304871	regulatory region 304871	290 bp proximal
Rr314877	regulatory region 314877	712 bp distal
Rr404546	regulatory region 404546	969 bp downstream