rs243292382 SNP Detail

Summary

• ID
  rs243292382
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52238063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCGCCCTG CGGGGTCGCG
  CCAGGCGGCC GCCCATTGGC CCGCCCCCGG CCCGCCCCCG GCGTATGCAA AGCGGGAGGC
  TCCGGCTCGG CTCCGCGCTG GGCCCGCCGT CCCCGCCGCC GCCCGCGCGG TCCTCTGCGC
  CAGCTCTAGC TCCCGCCGCG CGGCCGCGCA GCAGTCACCC ACGGAGGAGG CGGGGGTGGG
  K
  GGGGGGGAGA AACTAGGGCG GGTGGGGCTG GGAACACAGG GACCCCGATC CCTTCCCGGG
  TTTCGCGCGG AGGTTGGGAG GGGCAGTGAG CGGCTGCGGT TGGGGTGCGA CCTGAGGTCG
  TGGGGACAAG TCAGGTAAAT TCTCCAGTGG CCAGGAATGA GGGTTTGCCT TGGCCTTGGA
  CTGGCCCAGG ATGTCCTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	MA/MyJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss368309378	MGP_WTSI_6_52211072	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	MA/MyJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs243292382					SNP	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368309378	MGP_WTSI_6_52211072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52238063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17439	CpG island 17439	within coordinates
Gm56042	predicted gene, 56042	76 bp upstream
Gm56043	predicted gene, 56043	1514 bp upstream
Gm56044	predicted gene, 56044	1980 bp upstream
Hottip	Hoxa distal transcript antisense RNA	1697 bp upstream
Hoxa13	homeobox A13	198 bp upstream
Rr630397	regulatory region 630397	within coordinates
Rr630398	regulatory region 630398	1216 bp proximal
Rr630399	regulatory region 630399	1717 bp proximal
Tssr61032	transcription start site region 61032	285 bp upstream
Tssr61033	transcription start site region 61033	241 bp upstream