rs243300344 SNP Detail

Summary

• ID
  rs243300344
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139337607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACCTGGC TGTAAGGACT
  GCGGATGGCT TCTGCGCCTT CCTCAGCTCA GCATTTGTGC AGGGCGTGGA TAACACCCCA
  GGGAATAGGC CCCGTGGTGA GGGGCCCTGC TTGGGGGGTA GGACTCCAGG TGCCTCATGT
  TGAGGCAGGC TGCGGGGAAG CAACCCAGCT ACTTCTGGTG CCAAGAGCCA CCCGCCCGCA
  K
  AGCCCTTTCT CACAGAGGCA CCTCCTCCCC AGTGAGGCCT CCAGGGTTTA AGAGACAGGA
  TTAGAGCCCA GACAGCTAGG GCTGTAAACC CAGCCACCTG CTGGGTCTGT TCACGGTCTC
  CTAAATGGGA TGGCCCCTCA GTGTCTGGGT GGTTGTGCCC CTTACTCCAG GCTGCTGGGG
  TGAGAGCTCC CTCAGCTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704298	CHEV_5_139827806	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243300344					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139337607 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	765 bp upstream
Tssr49499	transcription start site region 49499	755 bp upstream