rs243307864 SNP Detail

Summary

• ID
  rs243307864
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84467281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAAGAAAT GGGCACCCTC
  ACGTGGGTTT CTCTTCACAT TGAGAGCGTC TGTTTGGGCA ACAGTTTGCA AAGTGTACTT
  TAACCTACAG TTCTTTTTAG CTTTTTTTTT TTTTAAACTG TATGTGTTTT GCCTGCATGT
  ATGTTTGTGC ACTGCATGTA TTATTGTACA CTGCATGTAT GTCTGTGCAC TGCATGTCTG
  K
  TGCCCGTGGA TGCAGAAGAC AGTGTGAATC CCCAGGAACT GGAGTTACAG ACACTTGTGA
  GCCACCATAT AGGTGCTGGG ACCCAGCCAG GTCCTCTCTT AATGCTCTTG ACCTCGGCAC
  CACCCCAGCC TCTAGCCTGC ATTTCTTTTT CTTTTGTTCT TTTGAGACAG GGTCTTGCTG
  TGTAGCACAA GCTGACCTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375384464	MGP_WTSI_8_86264551	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243307864					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384464	MGP_WTSI_8_86264551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84467281 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adgre5	adhesion G protein-coupled receptor E5			Intron
				Noncoding-Transcript-Variant
Cpgi20655	CpG island 20655			226 bp proximal
Gm46046	predicted gene, 46046			634 bp upstream
Rr368559	regulatory region 368559			514 bp downstream
Rr666301	regulatory region 666301			507 bp proximal
Rr666302	regulatory region 666302			664 bp proximal
Rr666303	regulatory region 666303			718 bp proximal
Rr666304	regulatory region 666304			1564 bp proximal
Tssr2618	transcription start site region 2618			539 bp upstream
Tssr2619	transcription start site region 2619			251 bp downstream
Tssr2620	transcription start site region 2620			624 bp upstream
Tssr2621	transcription start site region 2621			1903 bp upstream
Tssr78291	transcription start site region 78291			296 bp downstream
Tssr78292	transcription start site region 78292			274 bp downstream
Tssr78293	transcription start site region 78293			133 bp downstream
Tssr78294	transcription start site region 78294			78 bp downstream
Tssr78295	transcription start site region 78295			32 bp downstream
Tssr78296	transcription start site region 78296			13 bp downstream
Tssr78297	transcription start site region 78297			736 bp upstream
Tssr82049	transcription start site region 82049			582 bp upstream
Tssr82050	transcription start site region 82050			494 bp upstream
Tssr82051	transcription start site region 82051			220 bp upstream
Tssr82052	transcription start site region 82052			521 bp downstream