rs243310894 SNP Detail

Summary

• ID
  rs243310894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGAGATAG TCTGGGATAG
  ACTGGAACTC ATTATGTAGC CTGGGTTGTC CTTAAGTTAT CAACTTTCTT GCCTCCACCT
  CCTGAGTGGA TGGATTACAG GCTCCAGCCA CCATGTTTAG CTTTAGTTAA CATTTTTAAG
  CACTCAGGTT AGTATATTAC TGAATACACA TAGAAGGCTC TTTCTCAATT TTGAGGGAGA
  Y
  TGCAAAGAAT CCCTGACACT ATGAAAGGCA TACTTTATAC AAAATATAAT GTGTAACACA
  TAATAGGACA AGATTGTACC ACAAGGTGAA AGCCTGTGTT GAGCCAAGAG CATCAAAACC
  AGAGGGAGGA CTGAGCAGGC GCAAAGGAGG AAAGGGGAGG AGTCTGACTC ACCCACATTA
  CCACACAGTT CAGACAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366873371	MGP_WTSI_5_137624072	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243310894					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873371	MGP_WTSI_5_137624072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177049 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	1058 bp downstream
Tssr49309	transcription start site region 49309	1577 bp upstream
Tssr49310	transcription start site region 49310	1937 bp upstream
Tssr49311	transcription start site region 49311	1951 bp upstream
Tssr53917	transcription start site region 53917	1495 bp upstream
Tssr53918	transcription start site region 53918	1435 bp upstream
Tssr53919	transcription start site region 53919	1437 bp downstream
Tssr53920	transcription start site region 53920	1453 bp downstream
Tssr53921	transcription start site region 53921	1608 bp downstream
Tssr53922	transcription start site region 53922	1649 bp downstream
Tssr53923	transcription start site region 53923	1690 bp downstream
Tssr53924	transcription start site region 53924	1704 bp downstream
Tssr53925	transcription start site region 53925	1742 bp downstream
Tssr53926	transcription start site region 53926	1773 bp downstream
Tssr53927	transcription start site region 53927	1922 bp downstream
Tssr53928	transcription start site region 53928	1940 bp downstream
Tssr53929	transcription start site region 53929	1977 bp downstream