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rs243314459 SNP Detail
Summary
  • ID
    rs243314459
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:140428172 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTTTCCTCTC CCACTTCTGC
CAGGTCAGAT TCTTTACAAT TTTAAAACTC AGCTCTCCCA GGGAACGCCT TCCTTGATCC
TGGAACCCGG TAAGTACCAT GCTTTCAGTA ATTTCTTAAT CTTTCCTCTT ACTTCGCCTT
CCAACTGGGC AGAGATCTTG TTCTCCAGGT CTGTATTCTA AGCTTCTAGC ACCTTTGCAT
Y
TAGTCTTGCT TGTACTGAGG CGCGGTAAAT ACGTTTTTAA AATGAAGAAA ATTCCCATCA
CAAGTACTTT CAAGTCCACC TATGCTAATT ACTAATTTCA TAGTACGTCC CCCAGCTAAT
TACTAATTTC ATACTACACC AAACCTTTAT GTAACTTGAT CATTCTAACA GCACCCGGCT
GCACACTCTG GACGCATCCA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363501322 MGP_WTSI_4_140256776 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243314459 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss363501322 MGP_WTSI_4_140256776 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:140428172 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi15194 CpG island 15194 882 bp distal
Cpgi15195 CpG island 15195 204 bp proximal
Gm69527 predicted gene, 69527 within coordinates
Gm69529 predicted gene, 69529 391 bp downstream
Rcc2 regulator of chromosome condensation 2 within coordinates
Rr377298 regulatory region 377298 within coordinates
Rr603517 regulatory region 603517 978 bp distal
Rr603518 regulatory region 603518 310 bp distal
Rr603519 regulatory region 603519 within coordinates
Rr603520 regulatory region 603520 399 bp proximal
Rr603521 regulatory region 603521 549 bp proximal
Tssr39970 transcription start site region 39970 979 bp downstream
Tssr39971 transcription start site region 39971 906 bp downstream
Tssr39972 transcription start site region 39972 886 bp downstream
Tssr39973 transcription start site region 39973 863 bp downstream
Tssr39974 transcription start site region 39974 515 bp downstream
Tssr39975 transcription start site region 39975 376 bp downstream
Tssr39976 transcription start site region 39976 332 bp downstream
Tssr39977 transcription start site region 39977 248 bp downstream
Tssr39978 transcription start site region 39978 565 bp upstream
Tssr39979 transcription start site region 39979 586 bp upstream
Tssr39980 transcription start site region 39980 605 bp upstream
Tssr39981 transcription start site region 39981 649 bp upstream
Tssr39982 transcription start site region 39982 661 bp upstream
Tssr39983 transcription start site region 39983 747 bp upstream
Tssr39984 transcription start site region 39984 972 bp upstream
Tssr39985 transcription start site region 39985 1034 bp upstream
Tssr39986 transcription start site region 39986 1075 bp upstream
Tssr39987 transcription start site region 39987 1220 bp upstream
Tssr39988 transcription start site region 39988 1316 bp upstream
Tssr39989 transcription start site region 39989 1355 bp upstream
Tssr44270 transcription start site region 44270 1211 bp upstream
Tssr44271 transcription start site region 44271 1178 bp upstream
Tssr44272 transcription start site region 44272 1038 bp upstream
Tssr44273 transcription start site region 44273 208 bp downstream
Tssr44274 transcription start site region 44274 1537 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory