rs243314942 SNP Detail

Summary

• ID
  rs243314942
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141264878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTACGTTC TTTCTCAATG
  TGCGGAAAGT ATGAATAAAT TCTCATTGTA AGTGGGGTTG CATGCTGAGG CCTCTACCAG
  TTACCCGGAC ACGCGTTTCT GGGAGCAAAT AAGCGCTAAA TGCTACCAAC GGGTATGAAA
  AGCAGCATTT ACTTCTTTTC CTTCCACAAG CAAAAAGTAT TTAGAGAAAC CGAAAAGTCA
  C
  ACCTAATCGC TAAAATTTTG CACTTTTTGG CTACTTCACT AACGAATTCG AGGTGAAGGG
  TCTATTGTAA AAAAAAAAAA AACAACAAAC AAACAAAAAC AAAAAAAAAA AACGCTCGGT
  CACCAGCGCG GCGCGGGAAT GCATCCGCAG CGCCAAGCTT GGCGTTCGCG CTCCCTTCCC
  CGCGAGCTCC GGGACACGGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387945	CHEV_4_141093482	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243314942					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141264878 () rs orientation: forward

Symbol	Name	Function Class
B830004H01Rik	RIKEN cDNA B830004H01 gene	1642 bp upstream
Cpgi15233	CpG island 15233	360 bp distal
Cpgi15234	CpG island 15234	within coordinates
Gm4123	predicted gene 4123	150 bp downstream
Gm68462	predicted gene, 68462	1523 bp downstream
Rr1207	regulatory region 1207	within coordinates
Rr603788	regulatory region 603788	762 bp distal
Rr603789	regulatory region 603789	872 bp proximal
Spen	spen family transcription repressor	within coordinates
Tssr44321	transcription start site region 44321	867 bp downstream
Tssr44322	transcription start site region 44322	995 bp downstream