rs243315990 SNP Detail

Summary

• ID
  rs243315990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108218464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTCTTA GGAACATGAA
  TCCAGAGACT TGTGGGTAGT ATGAAGCAAT CTAGAGTGGT CTACAGGCTA TTGCCATCCT
  GGTATGTGTG CCTAATTGGT GACTTTAAGG GCCTCTTACT CCTGAACCAA CTCAGAAACA
  TATCCCGTGG TTCTAAACAA GCGGTTATGT GTGCATGCAG TTAGGTGGGG AGGAAATATA
  Y
  CGCGTTACAG ATGCCATGTA ATGCTTTTAC CGCTGAACCA TGTCCATAGC CCTTGGTTGT
  TTTAAGACTG TAGCTCAAGG TGACCCCCAG CTCCCAGCAA TTCTGGCTCT GTCTCTTGAT
  TGCTATGATG ACTGTCATCA TGCTGGCCAG CCTGTAATAA CATCCTCCTA TCTCCACCAA
  TTGCTGGGAT TACAGGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864994	MGP_WTSI_9_108243596	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243315990					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864994	MGP_WTSI_9_108243596	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108218464 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	1090 bp distal
Gm57050	predicted gene, 57050	1131 bp upstream
Gpx1	glutathione peroxidase 1	923 bp downstream
Rr383883	regulatory region 383883	1447 bp downstream
Rr686785	regulatory region 686785	1979 bp distal
Rr686786	regulatory region 686786	641 bp distal
Rr686787	regulatory region 686787	360 bp proximal
Rr686788	regulatory region 686788	1481 bp proximal
Tssr3010	transcription start site region 3010	1515 bp downstream
Tssr87094	transcription start site region 87094	1981 bp downstream
Tssr87095	transcription start site region 87095	1966 bp downstream
Tssr87096	transcription start site region 87096	1955 bp downstream
Tssr87097	transcription start site region 87097	1345 bp downstream
Tssr87098	transcription start site region 87098	1278 bp downstream
Tssr87099	transcription start site region 87099	949 bp downstream
Tssr91519	transcription start site region 91519	1372 bp upstream
Tssr91520	transcription start site region 91520	1281 bp upstream
Tssr91521	transcription start site region 91521	1185 bp upstream
Tssr91522	transcription start site region 91522	1109 bp upstream
Tssr91523	transcription start site region 91523	924 bp upstream