rs243324528 SNP Detail

Summary

• ID
  rs243324528
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180596169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCGAACT TTGCTGTAGG
  CTCAGTCCCT TGTGCCGCCG GTAGTAAGAC ACCCGTGCTT GCTTCTCCCG GCCACAGGCG
  CCTTGGGGCG CCTGGGCATC AAGAGCAACA TTCTCCCCCT GATTAGGCAC TCTGGACCAG
  ACTCCCGAAG CAGCCCTCCC GAAGGCTTTT GTTCCTAGCT GTCGGGGGTT GGGGGGGGGT
  T
  GGGGGGGCAG GCGCTCCTCA GCACCTGTCC CCGCCAGCAG GGACGCTACT CCCCAAGCAA
  ACAGCGCACC GTGACAGCTC CCCTTGCACG CCACAAATCG GCTGCAGCAA CCACAGCCAA
  GTGCAAGCCG TCATCCCAGG AACCACCCGA GGCTGGTGCG GGTCCGGAAA GCCACGCAGG
  ACACCCGGAC TCACCAGCTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
ss356770581	MGP_WTSI_2_180689081	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
rs243324528					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356770581	MGP_WTSI_2_180689081	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180596169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12910	CpG island 12910	within coordinates
Gm14341	predicted gene 14341	88 bp upstream
Nkain4	Na+/K+ transporting ATPase interacting 4	Intron
Rr374382	regulatory region 374382	within coordinates
Rr572892	regulatory region 572892	within coordinates
Rr572893	regulatory region 572893	313 bp proximal
Rr572894	regulatory region 572894	962 bp proximal
Tssr28148	transcription start site region 28148	271 bp downstream
Tssr28149	transcription start site region 28149	300 bp downstream