rs243343188 SNP Detail

Summary

• ID
  rs243343188
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94966774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTGTTTA ATATACAGAG
  TTCTCCTAGC CCGGGAAAGA AGCTAATGTT AGGTACTGGA TTCTCAGGGT GCTGGGCAAC
  AAAGACCCTA CTTCCGAAGA TGTCTGAAAT GTGGAGCGGT CGCGTCTAGA CAGGTTCTGG
  CCAGGTCAGC ACTTGCCATG ATTACTGCCC CCCTCCCCCC ACCCCCTTCC TCCACTTGCC
  K
  CCAAGCCCCA CAATCGGAGA ACTGCCGTCT TACCCGCCCT CTTAATCCTG GCTCACAAGG
  AAAGGCCAGC AGCAGCAGGC CTGGAAGTCA GCGGGCCCAG GGCTCCAGTT TAGCTTAGGT
  CAGGTATCCG CGCACATACC CCTCTCTCTG CACCCCACCT CACCGCCGCC AGGCTGACTT
  ACAGGTAGCG CTGTTGTCGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384338873	MGP_WTSI_11_94937262	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	T	G	G	G	G	T	T	G	G	G	G	G	G	G	T	T	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243343188					SNP	G	G	G	T	T	G	G	G	G	T	T	G	G	G	G	G	G	G	T	T	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384338873	MGP_WTSI_11_94937262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94966774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	within coordinates
Gm53645	predicted gene, 53645	236 bp upstream
Gm57362	predicted gene, 57362	480 bp upstream
Itga3	integrin alpha 3	within coordinates
Tssr3652	transcription start site region 3652	644 bp downstream
Tssr104346	transcription start site region 104346	997 bp upstream
Tssr110254	transcription start site region 110254	618 bp downstream
Tssr110255	transcription start site region 110255	695 bp downstream
Tssr110256	transcription start site region 110256	709 bp downstream
Tssr110257	transcription start site region 110257	855 bp downstream