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rs243351651 SNP Detail
Summary
  • ID
    rs243351651
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:87843753 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCAAAAGCCA TTGACTCTGC
TGAAAGTCAA TTAACTCCAT GCATGAGAAA TTCTTATTAA TGTTTTTGGC CTAGGAATAA
AGTAAATATA CTACAAAGAG GCTAATCAGC AAGATTCTTC ATCTGGTAGG TGGTCAGTTC
AGTGCCACAT GGTTAGCATG TCCTTTCACT GACATGTTCA CTTAGAAAAT AAAAGGAACA
Y
AATTTCTACT GGAGAGAAGC TTATGTTCAT TATTAAACAC AGATAACTCC ACTAGTAACT
GCAGTCATGA TGGAAAAAAT GTATTGGTGC CCACATGAGC TTTCTAGACA TAACTTATTG
ATGAGTAGTT TACCTCTGCC TGCAGCTGTC CCATGAGATT CACCTTCTGA AGTTTCTGCT
AGAAATAAAC AATACATTAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365777309 MGP_WTSI_5_88124919 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243351651 SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss365777309 MGP_WTSI_5_88124919 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:87843753 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Csn2 casein beta within coordinates
D5Mit12 DNA segment, Chr 5, Massachusetts Institute of Technology 12 1916 bp distal
D5Mit16 DNA segment, Chr 5, Massachusetts Institute of Technology 16 1876 bp distal
D5Mit16.1 DNA segment, Chr 5, Massachusetts Institute of Technology 16.1 1719 bp distal
Tssr1529 transcription start site region 1529 1333 bp downstream
Tssr46883 transcription start site region 46883 1383 bp downstream
Tssr46884 transcription start site region 46884 1368 bp downstream
Tssr46885 transcription start site region 46885 1347 bp downstream
Tssr46886 transcription start site region 46886 1317 bp downstream
Tssr46887 transcription start site region 46887 1300 bp downstream
Tssr46888 transcription start site region 46888 1194 bp downstream
Tssr46889 transcription start site region 46889 1175 bp downstream
Tssr46890 transcription start site region 46890 1142 bp downstream
Tssr46891 transcription start site region 46891 1129 bp downstream
Tssr46892 transcription start site region 46892 1100 bp downstream
Tssr46893 transcription start site region 46893 1074 bp downstream
Tssr46894 transcription start site region 46894 1029 bp downstream
Tssr46895 transcription start site region 46895 1009 bp downstream
Tssr46896 transcription start site region 46896 930 bp downstream
Tssr51618 transcription start site region 51618 1354 bp upstream
Tssr51619 transcription start site region 51619 1320 bp upstream
Tssr51620 transcription start site region 51620 1310 bp upstream
Tssr51621 transcription start site region 51621 1291 bp upstream
Tssr51622 transcription start site region 51622 1255 bp upstream
Tssr51623 transcription start site region 51623 1239 bp upstream
Tssr51624 transcription start site region 51624 1222 bp upstream
Tssr51625 transcription start site region 51625 1212 bp upstream
Tssr51626 transcription start site region 51626 1200 bp upstream
Tssr51627 transcription start site region 51627 1174 bp upstream
Tssr51628 transcription start site region 51628 1064 bp upstream
Tssr51629 transcription start site region 51629 970 bp upstream
Tssr51630 transcription start site region 51630 922 bp upstream
Tssr51631 transcription start site region 51631 883 bp upstream
Tssr51632 transcription start site region 51632 624 bp upstream
Tssr51633 transcription start site region 51633 159 bp downstream
Tssr51634 transcription start site region 51634 281 bp downstream
Tssr51635 transcription start site region 51635 1245 bp downstream
Tssr51636 transcription start site region 51636 1271 bp downstream
Tssr51637 transcription start site region 51637 1384 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory