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rs243361795 SNP Detail
Summary
  • ID
    rs243361795
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:142130597 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATGTCATGT CTTTCTGTCA
CATTGACCAC ACCTGTCATC CTCGCCTTCA GTGACTGGCA GGCACATCCA CCTCTGCTGG
AGACCTGGCT ATAGGGAGAA ATGAAGACAT GAGTTAATTG AACTTGCGTG GGAGGAGACT
GGGTGACCAC GAGCGGGACA GACACTTACC CTAGTCTCCA GTCCGAGCTC TTCGAGACAC
Y
GATCACTGCT CCGTCGCCGC CCGCAAGGCC CTCCTTGGCC ACGGACTCTG GAGGCCAGTG
CCTCCCTGGC TCACCACCCC AGCTACTCGC TCTACCTGCA CCCAACCTCC CTCCCTAGAA
ACTCATTCAT TCTGCCCCGC CTGCCTCGCC TCGTCTGGCT TCATCCTGTG CCCTTGACTC
CCCTGGAAAT GTTCTGTCTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373453167 MGP_WTSI_7_149762765 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243361795 SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373453167 MGP_WTSI_7_149762765 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:142130597 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm56420 predicted gene, 56420 within coordinates
Gm56421 predicted gene, 56421 989 bp upstream
H19 H19, imprinted maternally expressed transcript within coordinates
Mir675 microRNA 675 204 bp downstream
Rr658231 regulatory region 658231 1275 bp proximal
Tssr2460 transcription start site region 2460 383 bp upstream
Tssr2461 transcription start site region 2461 1051 bp upstream
Tssr70212 transcription start site region 70212 1326 bp downstream
Tssr70213 transcription start site region 70213 789 bp downstream
Tssr70214 transcription start site region 70214 207 bp downstream
Tssr70215 transcription start site region 70215 88 bp upstream
Tssr70216 transcription start site region 70216 125 bp upstream
Tssr70217 transcription start site region 70217 182 bp upstream
Tssr70218 transcription start site region 70218 513 bp upstream
Tssr70219 transcription start site region 70219 552 bp upstream
Tssr70220 transcription start site region 70220 645 bp upstream
Tssr70221 transcription start site region 70221 726 bp upstream
Tssr70222 transcription start site region 70222 741 bp upstream
Tssr70223 transcription start site region 70223 913 bp upstream
Tssr70224 transcription start site region 70224 970 bp upstream
Tssr70225 transcription start site region 70225 1008 bp upstream
Tssr70226 transcription start site region 70226 1105 bp upstream
Tssr70227 transcription start site region 70227 1177 bp upstream
Tssr70228 transcription start site region 70228 1200 bp upstream
Tssr75813 transcription start site region 75813 1283 bp upstream
Tssr75814 transcription start site region 75814 1231 bp upstream
Tssr75815 transcription start site region 75815 1067 bp upstream
Tssr75816 transcription start site region 75816 1006 bp upstream
Tssr75817 transcription start site region 75817 843 bp upstream
Tssr75818 transcription start site region 75818 767 bp upstream
Tssr75819 transcription start site region 75819 597 bp upstream
Tssr75820 transcription start site region 75820 546 bp upstream
Tssr75821 transcription start site region 75821 533 bp upstream
Tssr75822 transcription start site region 75822 372 bp upstream
Tssr75823 transcription start site region 75823 329 bp upstream
Tssr75824 transcription start site region 75824 296 bp upstream
Tssr75825 transcription start site region 75825 172 bp upstream
Tssr75826 transcription start site region 75826 124 bp upstream
Tssr75827 transcription start site region 75827 104 bp upstream
Tssr75828 transcription start site region 75828 27 bp downstream
Tssr75829 transcription start site region 75829 504 bp downstream
Tssr75830 transcription start site region 75830 534 bp downstream
Tssr75831 transcription start site region 75831 554 bp downstream
Tssr75832 transcription start site region 75832 627 bp downstream
Tssr75833 transcription start site region 75833 704 bp downstream
Tssr75834 transcription start site region 75834 970 bp downstream
Tssr75835 transcription start site region 75835 1006 bp downstream
Tssr75836 transcription start site region 75836 1028 bp downstream
Tssr75837 transcription start site region 75837 1048 bp downstream
Tssr75838 transcription start site region 75838 1125 bp downstream
Tssr75839 transcription start site region 75839 1138 bp downstream
Tssr75840 transcription start site region 75840 1180 bp downstream
Tssr75841 transcription start site region 75841 1182 bp downstream
Tssr75842 transcription start site region 75842 1219 bp downstream
Tssr75843 transcription start site region 75843 1226 bp downstream
Tssr75844 transcription start site region 75844 1233 bp downstream
Tssr75845 transcription start site region 75845 1279 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory