rs243362942 SNP Detail

Summary

• ID
  rs243362942
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92108396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTATTA AAAATGTTTA
  TAAGTATGAG CTAAGATTTA GTAAATATTA ATTTTAGTGC AAGAAAGGGA GGGAGGGAGG
  GAGGGAGGGA GGGAGGAAGG GCAAACGGAA GGAAGGAGAA CAAAGATGAG CAAGCCCCGG
  AGTGCAAGCC AGCAGTAAGC AGCATTCCTC CTCGGCCTCA GCTTCAGTTC CTACCTCCAG
  W
  ACCTGCCCTG CAGGAGCTCC TGCCTTGCTT TCCCCTAATA ACAAACTGTC ACAGCAAAGC
  CAAACAATAG ACCCTTTGGT CCCCAAGTAA CTTTTGGTTG TGGTGCTTAT TACAGCACAG
  GAGAAGCAAA CCCCCGTGCT CTGCTTGCCA GCTAAGAGCA GCCTTACCCG TATGCTGGGT
  CTTCCCACTG TGACTACTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365873102	MGP_WTSI_5_92389563	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243362942					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365873102	MGP_WTSI_5_92389563	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92108396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16049	CpG island 16049	1893 bp proximal
Gm43039	predicted gene 43039	1575 bp upstream
Rchy1	ring finger and CHY zinc finger domain containing 1	within coordinates
Rr367874	regulatory region 367874	815 bp upstream
Rr614524	regulatory region 614524	within coordinates
Rr614525	regulatory region 614525	1676 bp proximal
Tssr47269	transcription start site region 47269	1888 bp upstream
Tssr47270	transcription start site region 47270	1903 bp upstream
Tssr47271	transcription start site region 47271	1929 bp upstream
Tssr51828	transcription start site region 51828	910 bp downstream
Tssr51829	transcription start site region 51829	1070 bp downstream
Tssr51830	transcription start site region 51830	1745 bp downstream
Tssr51831	transcription start site region 51831	1778 bp downstream