rs243369779 SNP Detail

Summary

• ID
  rs243369779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115081060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACATATA TATACATATA
  CATGTATATA TCATATGCAT GCAGTGCCCT CAGAGGCCAG AAGGGGCGTC ATATCCCCTA
  GAACTGGAGC TATATCTGGT TTTAAACCAC CATGTGGGTG CTGTAAACTG AACCAGGGTC
  CTCTGCAAGA GCAACAAGTG GTGTCAATCC CTGAGCCATC TCTTCAGGTC CTAAGGCTCT
  R
  TTTAATTAGT TTCTTGGGGA TTTTGTGCAG TGTGCTTTGG ACATGCTGAC CTCTTCTCCC
  GGGACCTCCC AGATCCACTT CCCTACCCAC TCAGCTTTGT GTCCCTTTAG AACAAAAGCA
  AAACCAAAGG CCATCAAGTT CAGTTGTACT GCTAATAGAC TCTACAGGAG GCCTCCTACT
  GGAGCTTGGG TCACTTACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323861651	CHEV_11_115051548	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243369779					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115081060 () rs orientation: forward

Symbol	Name	Function Class
Rr459796	regulatory region 459796	1959 bp distal
Rr459797	regulatory region 459797	1624 bp distal
Rr459798	regulatory region 459798	1200 bp distal
Rr459799	regulatory region 459799	608 bp distal
Rr459800	regulatory region 459800	1852 bp proximal
Tmem104	transmembrane protein 104	within coordinates
Tssr3729	transcription start site region 3729	1554 bp upstream
Tssr3730	transcription start site region 3730	607 bp downstream
Tssr111736	transcription start site region 111736	1460 bp upstream