rs243382389 SNP Detail

Summary

• ID
  rs243382389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCAGTAC TCTCACTTAT
  GGGCTTCTTG GGGTTTGAGT GAAGAGTGGG GCCGCAAGTC TCTGCCCTCA CTTGTCTAGC
  TGCTCTGAGG TGCCAGTGGT CAGGACTGCA TGGGGAAATG AAGTAGGTGC CATGGGCTGT
  CTCAGCAGAG GCCAGAATGT ACAGGATGTT CATGTGCCAT GGGCAGAGTT CATTTTCCAG
  Y
  GCACTATACC ACCCAGGTTT CCCAGGAGCC TGTGGGAGGC TTGCATGCTG CCCTTCACTT
  CTCTTTCTCT CTCTCCCCAG ATCGAGGCTC AGTGAGACAC TGACAAGTAG CTAGAGCTGC
  AGCAGGAAAA ACAAGGCTAG ATTGATCCTG ACCCTTTCCT AACCCTGCCC CTCACTGCTA
  AGTGACTCCA CAGACAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234344	CHEV_9_123702284	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243382389					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622231 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	Intron
Tssr92157	transcription start site region 92157	1100 bp upstream
Tssr92158	transcription start site region 92158	1094 bp upstream
Tssr92159	transcription start site region 92159	1070 bp upstream
Tssr92160	transcription start site region 92160	695 bp upstream
Tssr92161	transcription start site region 92161	674 bp upstream
Tssr92162	transcription start site region 92162	1659 bp downstream