rs243397522 SNP Detail

Summary

• ID
  rs243397522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:7869381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGTTGCC CGGATGTAGT
  TGGTGGAGCG GCGGCGGCTG TAGCAGCGGC AGGAGGCGGC GAGAAGGACC CGGCGGCGGC
  GGAGCAGGAG GAGGGAAGGT GCTGGAGGCG TTCGCTCTCC GCGGGGACCG GAACACGGCC
  TCTCACCCCC TCCCCCCGGC TCGCGCTGCC GCCCCGTAGT TGGCACCTCT GCCCCAGCCG
  R
  CCCTAAGCGG TGGTGACGGA GGGAGATGGC CCGGGACCGC CGGCGCCAGT AACGGGGAGG
  TGCCGCGAGC CGCCGAGGGT GCGCTGAGAC CTGGTGCCGG GGCTGCCCGC CGCCCGCCCG
  CCGCCCGCGC GCCCGCCCGC CTGCCTCGCG GCCGCTCTCC CCCTCCCCGA CACACACACA
  CAGCCGGGCA TTGATGGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399628979	MGP_WTSI_18_7869379	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	A	G	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243397522					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	A	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399628979	MGP_WTSI_18_7869379	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7869381 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi9688	CpG island 9688			within coordinates
Gm9993	predicted gene 9993			268 bp upstream
Rr405554	regulatory region 405554			113 bp downstream
Rr533616	regulatory region 533616			305 bp distal
Rr533617	regulatory region 533617			within coordinates
Rr533618	regulatory region 533618			131 bp proximal
Tssr149978	transcription start site region 149978			887 bp downstream
Tssr149979	transcription start site region 149979			519 bp downstream
Tssr149980	transcription start site region 149980			493 bp downstream
Tssr149981	transcription start site region 149981			229 bp downstream
Tssr149982	transcription start site region 149982			172 bp downstream
Tssr149983	transcription start site region 149983			155 bp downstream
Tssr149984	transcription start site region 149984			52 bp downstream
Tssr149985	transcription start site region 149985			within coordinates
Tssr149986	transcription start site region 149986			326 bp upstream
Tssr149987	transcription start site region 149987			494 bp upstream
Tssr152379	transcription start site region 152379			257 bp upstream
Wac	WW domain containing adaptor with coiled-coil			Intron
				mRNA-UTR