rs243407618 SNP Detail

Summary

• ID
  rs243407618
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109749912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGAAG GGGCCCCGAG
  AGGCCCTCTG GCAAAGGAAA CTTCCTTTTT ACCTTCAAGC TATCAAAAGA GACCTCTTAG
  GCGTAGCTTT AAAGGAATAA CAGATCGTGT GAAGGGAAAA CTCCCTTTTA GGCAAGCTGG
  GGCATCACTG TATTTCCAGG TGGGTGGTGC CGAGGCATTC GGCTGGCCCT CTCAGGTTGG
  D
  GATGTGGAGA ACTGAGACCC TTGGCTTTGC ACCCTAGTCT CAGATTTTGG CCCAGTCTTA
  GGTGTTGTTG ATGCCTGGAA AGACCCTTTC TTTCGAAATG ATATTTGACT TTTCACCAAA
  CCATGTGAAG CGATTTGCTC ATAGAGGTCT ATTAAATCTG AGCAGGGCTG GCAGGTGAGG
  AGCTAGGGTT TTCCTGTTTC                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355230985	MGP_WTSI_2_109759724	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243407618					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355230985	MGP_WTSI_2_109759724	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109749912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	706 bp distal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr397176	regulatory region 397176	1908 bp downstream
Rr562509	regulatory region 562509	1910 bp distal
Rr562510	regulatory region 562510	within coordinates
Rr562511	regulatory region 562511	1783 bp distal
Rr562512	regulatory region 562512	1744 bp distal
Rr562513	regulatory region 562513	1356 bp distal
Rr562514	regulatory region 562514	454 bp proximal
Tssr19307	transcription start site region 19307	1975 bp downstream
Tssr19308	transcription start site region 19308	1929 bp downstream
Tssr19309	transcription start site region 19309	1911 bp downstream
Tssr19310	transcription start site region 19310	1881 bp downstream
Tssr19311	transcription start site region 19311	1831 bp downstream