rs243408272 SNP Detail

Summary

• ID
  rs243408272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36788699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGTGAG CTAAGAAGAT
  GACAGAAAGA CTTTCCTTTT TGCCCCTTAA TTTTATCTTC ATCTTTAGCA TATTCCTACT
  GTCAGTTCAG TAGACCATGC CAGATTAATT ATGGTGCTTG TTTCTGGTGT TGGTAAAGCA
  AGCATGAGAG TCTCATGATG TCAGTTCTAT CTCATTTGCT GCTTCAACAT ATAACATTTT
  R
  ATTAAAAAGG TATATGTAAA AATTAATTAC ATCTGTGGTT CTCAAGTGAG AGCAGTTTTA
  TCCTCTAGGA GACAGTTGGT AATGTCTGGA GTCGTTTTCA GTTATCACCA CTTGAGGGAA
  GATAGGACAT ATCCCGTCAG TCCTCTGGTG AATAGAATGC TACTTAAACA TCCTATAGAC
  ACCTCTCTAT GGCTCAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367972023	MGP_WTSI_6_36761764	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243408272					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367972023	MGP_WTSI_6_36761764	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36788699 () rs orientation: forward

Symbol	Name	Function Class
Ptn	pleiotrophin	1585 bp upstream
Rr135017	regulatory region 135017	1102 bp proximal
Rr146140	regulatory region 146140	898 bp distal
Tssr60337	transcription start site region 60337	1790 bp upstream
Tssr60338	transcription start site region 60338	1764 bp upstream
Tssr60339	transcription start site region 60339	1740 bp upstream
Tssr60340	transcription start site region 60340	1707 bp upstream
Tssr60341	transcription start site region 60341	1673 bp upstream
Tssr60342	transcription start site region 60342	1638 bp upstream
Tssr60343	transcription start site region 60343	1617 bp upstream
Tssr60344	transcription start site region 60344	1577 bp upstream