rs243415004 SNP Detail

Summary

• ID
  rs243415004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72538707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCTTCCC CCTGACTCCT
  AAGCATGCAT ATATGCACAT GGCCTGGCCC TCTCACCCAT TCCCCTCAAC CTTTGAAATT
  TAACATTCAT CAACCATGTC CACTCAGAGA CTCCCTATAA ATCTTTCTTC TTGCTCATCC
  TGAAACTCAG ATGTTTTTGG CAAGAGGGGC TAGGAAAGAT GGATAGAGCA CACTGCCACC
  R
  CCATTGTTCC ATCCAGGCAT GTGTTCCTCC TCTTCCTTGC TCATGTCTGA CTTCCAGCTC
  TCCTGGGCTC TGCTTGCTGC CCTTATCCTC TGGTGTTCTC TCTTCAACAA GTTCACTACC
  TGTCAATCCC AGCTACAACC TGGCTGTACT AACTCCTGGA TCTTTCCCTC TCTCCAACCC
  TGTTATGCTT CCTGACACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771589	MGP_WTSI_X_70740440	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243415004					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771589	MGP_WTSI_X_70740440	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72538707 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	1107 bp distal
Rr6090	regulatory region 6090	1707 bp distal
Rr7747	regulatory region 7747	within coordinates
Rr10758	regulatory region 10758	1180 bp distal
Tssr5633	transcription start site region 5633	1824 bp downstream
Tssr5634	transcription start site region 5634	380 bp upstream
Tssr5635	transcription start site region 5635	37 bp upstream
Tssr161225	transcription start site region 161225	1887 bp downstream
Tssr161226	transcription start site region 161226	1836 bp downstream
Tssr161227	transcription start site region 161227	1786 bp downstream
Tssr161228	transcription start site region 161228	492 bp downstream
Tssr161229	transcription start site region 161229	459 bp downstream
Tssr161230	transcription start site region 161230	435 bp downstream
Tssr161231	transcription start site region 161231	410 bp downstream
Tssr161232	transcription start site region 161232	365 bp downstream
Tssr161233	transcription start site region 161233	291 bp downstream
Tssr161234	transcription start site region 161234	267 bp downstream
Tssr161235	transcription start site region 161235	185 bp downstream
Tssr161236	transcription start site region 161236	138 bp downstream
Tssr161237	transcription start site region 161237	113 bp downstream
Tssr161238	transcription start site region 161238	77 bp downstream
Tssr161239	transcription start site region 161239	26 bp downstream
Tssr161240	transcription start site region 161240	within coordinates
Tssr161241	transcription start site region 161241	11 bp upstream
Tssr161242	transcription start site region 161242	44 bp upstream
Tssr161243	transcription start site region 161243	208 bp upstream
Tssr161244	transcription start site region 161244	232 bp upstream
Tssr161245	transcription start site region 161245	327 bp upstream
Tssr161246	transcription start site region 161246	483 bp upstream
Tssr161247	transcription start site region 161247	506 bp upstream
Tssr161248	transcription start site region 161248	775 bp upstream
Tssr163547	transcription start site region 163547	424 bp upstream
Tssr163548	transcription start site region 163548	352 bp upstream
Tssr163549	transcription start site region 163549	286 bp upstream
Tssr163550	transcription start site region 163550	223 bp upstream
Tssr163551	transcription start site region 163551	65 bp upstream
Tssr163552	transcription start site region 163552	3 bp upstream
Tssr163553	transcription start site region 163553	52 bp downstream
Tssr163554	transcription start site region 163554	71 bp downstream
Tssr163555	transcription start site region 163555	98 bp downstream