rs243418043 SNP Detail

Summary

• ID
  rs243418043
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124734071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGGCGAG TTGGCCGAAG
  CCGGCCGGGG CGCAGAGAGA GAGGGCCTCG CTGCGCAGAG CGTGGGGAGC TCGCGGGCCC
  CGCGCGGGAG AGGGCTGGGT GGGAGGGGCT GTGGACTGCG AAGGCAGACC TGGGGAGGCT
  GGAGAAGTTT GGGGACAAGA GGGGCTGTGG CAGGGGTGAA GTAGGTGGAG TTTGGGGAAT
  W
  ATGAAGTAGA GATTTGGATA ATGGGACTGT ATTGGAAAGA TGGAGAGGAA GGGCCAGAAG
  TAGAGGCTGG AGGGGTTTAG GAGCTATTTT GGAGAGCCTA CGATGGAAGT TTGTGGACCT
  GGGCGGGAAA GGATGAAGAC GTACTAGGAG AATGGTGTTT CTGGAAGAGA TAAGCGTTTA
  AGGCAGTGAT TGGTGTTGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369942284	MGP_WTSI_6_124707126	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243418043					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369942284	MGP_WTSI_6_124707126	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124734071 () rs orientation: forward

Symbol	Name	Function Class
Atn1	atrophin 1	621 bp upstream
Cpgi17967	CpG island 17967	within coordinates
Gm45234	predicted gene 45234	1087 bp upstream
Rr145725	regulatory region 145725	within coordinates
Tssr63141	transcription start site region 63141	745 bp upstream
Tssr63142	transcription start site region 63142	581 bp upstream
Tssr63143	transcription start site region 63143	340 bp upstream
Tssr63144	transcription start site region 63144	261 bp upstream
Tssr63145	transcription start site region 63145	225 bp upstream
Tssr63146	transcription start site region 63146	210 bp upstream
Tssr63147	transcription start site region 63147	133 bp upstream
Tssr63148	transcription start site region 63148	100 bp upstream
Tssr63149	transcription start site region 63149	77 bp upstream
Tssr63150	transcription start site region 63150	131 bp downstream